BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146555.15 - phase: 0 /pseudo
(552 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 82 6e-17
AV410378 84 6e-17
AV424544 46 2e-05
TC13588 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall... 41 6e-04
TC17861 37 0.011
AV780009 36 0.014
TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific... 36 0.014
BI419476 35 0.041
BP041937 34 0.054
TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Trop... 34 0.070
AV779929 33 0.12
AV410992 33 0.12
BP033767 32 0.20
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 32 0.20
TC12188 similar to GB|AAF48767.2|22832753|AE003506 CG6474-PA {Dr... 32 0.20
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 32 0.35
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 32 0.35
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 31 0.46
TC11037 weakly similar to GB|AAP12885.1|30017303|BT006236 At3g12... 31 0.46
AU088795 31 0.60
>BP066094
Length = 532
Score = 82.0 bits (201), Expect(2) = 6e-17
Identities = 44/113 (38%), Positives = 68/113 (59%), Gaps = 1/113 (0%)
Frame = +2
Query: 176 AKVTTIRLVIALASINY*FLHQLDVNNAFLHGDLHEDVYMAIPPGVSTSK-PNQVCKLSK 234
+K IRL+I+ + + LHQ++V +AFL+G + E+VY+ PPG K + + KL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 235 SLYGLKPASRKWYEKLTCLPITNGYQQATSNASLFTKKNLDSFIMLLVYVYDI 287
SLYGLK A R WYE+L+ + N + + +LF K D +++ +YV DI
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDI 424
Score = 22.3 bits (46), Expect(2) = 6e-17
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 160 YNQIEGLDYFDTFSLVAK 177
Y+Q G+DY +TF+ VA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>AV410378
Length = 358
Score = 84.0 bits (206), Expect = 6e-17
Identities = 39/120 (32%), Positives = 70/120 (57%), Gaps = 4/120 (3%)
Frame = +1
Query: 12 PSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTN----NSHVQYPISN 67
P P T ++P + RI+ R + P+Y+ DY C + ++T + ++ + YP+S
Sbjct: 1 PLPSETLSNPEEGNVQ---RISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSK 171
Query: 68 FLSHTYLSKSHSIFAMSLVSYTEPKSYDEAIKHDCWKQVMQNELTTLDQTGTWKIVDLPP 127
+S+ L+ S+ F M++ + +EP Y EA+KH+CW++ M E+ L++ TW +VD PP
Sbjct: 172 VISYHKLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPP 351
>AV424544
Length = 276
Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/59 (45%), Positives = 38/59 (63%)
Frame = +3
Query: 258 GYQQATSNASLFTKKNLDSFIMLLVYVYDITLAGDFLSEITFIKNALNQASKSKILVSL 316
GY Q+ + SLFTK SF ++LVYV D+ LAG+ L+EI +KN L+ + K L +L
Sbjct: 33 GYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTL 209
>TC13588 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall structural
protein 1.8 precursor (GRP 1.8), partial (6%)
Length = 517
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -3
Query: 6 HIPTTS----PSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTNNSHV 61
H PTTS P PP P PP PPP + + +T T+ + TT+TTN+ H
Sbjct: 470 HNPTTSILHFPPPPCPSIPPPPPPPPPPHQDLYLHSLTHTH------TLTTTTTTNHHHS 309
Query: 62 QYPISNFLSHTYLSKSHSIFAMSLVSYTEP 91
F T S + +I ++ +S P
Sbjct: 308 NNKPFQFAPQTLNSPNLTIHHLTTISTLSP 219
>TC17861
Length = 510
Score = 36.6 bits (83), Expect = 0.011
Identities = 29/78 (37%), Positives = 39/78 (49%), Gaps = 7/78 (8%)
Frame = +2
Query: 7 IPTTSP--SPPI--TKTSPSPPFIPPPIR---ITTRNKITPTYM*DYICNIPTTSTTNNS 59
IPT++P SPP+ T SPSPP PPPI+ T IT T ++ + NN
Sbjct: 245 IPTSAPRSSPPMAGTSNSPSPPSPPPPIQSPPTPTTTTITIT------TSLSISFNQNNR 406
Query: 60 HVQYPISNFLSHTYLSKS 77
H P+ + S +Y S S
Sbjct: 407 HRLLPVWHGSSSSYPSPS 460
>AV780009
Length = 529
Score = 36.2 bits (82), Expect = 0.014
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = -2
Query: 443 KAIMMLTGQVVKILDVQFQDIVSF*NNPSYHGEQRNNLLYPGLLLNLGIGSWHLLPVRIK 502
K I++LTG V ILDV DI F +HG +RN L+ L IG LL V+
Sbjct: 444 KPIVILTGLVAPILDVLSLDIPYFLAPL*FHGARRNKPLFLVHPLRQSIGPLLLLCVKSS 265
Query: 503 GCFIYSGIYLLHVFNFQFFT-VTTKVLCTLQPTQSSMREP 541
G I S +F+++F + VT + TL + R P
Sbjct: 264 GSPICSS-SSSSMFHYRFLSFVTISLRFTLLTIRHFTRGP 148
>TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific
extensin-like protein precursor (PELP), partial (11%)
Length = 630
Score = 36.2 bits (82), Expect = 0.014
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Frame = +2
Query: 8 PTTSPSPPITKTSP----------SPPFIPPPIRITTRNKIT-----PTYM*DYICNIPT 52
P +PSPPI K+ P SPP+ PPP++ T ++ P + + IP+
Sbjct: 389 PVKAPSPPIVKSPPVKAPTPPIVKSPPYYPPPVKAPTPPQVKTPPPHPPVVKPPVAPIPS 568
Query: 53 TSTTNNSHVQYPISNF 68
T + P+ N+
Sbjct: 569 TPIVKSMKDCIPLCNY 616
Score = 33.1 bits (74), Expect = 0.12
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 8 PTTSPSPPITKTSPSPPFIPPPIR 31
P +PSPPI K SPP+ PPP++
Sbjct: 242 PVKAPSPPIVK---SPPYFPPPVK 304
Score = 30.8 bits (68), Expect = 0.60
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Frame = +2
Query: 8 PTTSPSPPITKTSP----------SPPFIPPPIR 31
P +PSPPI K+ P SPP PPP++
Sbjct: 296 PVKAPSPPIVKSPPVKAPTPPIVKSPPSYPPPVK 397
>BI419476
Length = 520
Score = 34.7 bits (78), Expect = 0.041
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +1
Query: 1 FTAHTHIPTTSPSPPITKTSPSPPFIPPPIRITTRNKIT 39
F H T SPSP + SP PP PPP +RN T
Sbjct: 160 FAFFNHSTTLSPSPTRRRPSPPPPSHPPPTSPASRNGST 276
>BP041937
Length = 430
Score = 34.3 bits (77), Expect = 0.054
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 9 TTSPSPPITKTSPSPPFIPPPIRITTR 35
TT P+PP T SPSPP PPP + R
Sbjct: 382 TTWPTPPSTTRSPSPPSSPPPRKCLDR 302
>TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Tropoelastin),
partial (3%)
Length = 517
Score = 33.9 bits (76), Expect = 0.070
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 8 PTTSPSPPITKTSPSPPFIPPPIRITTRNK 37
P +P+P P+PP PPP+ +TT NK
Sbjct: 319 PPPTPTPATYPPIPNPPITPPPLTMTTPNK 408
>AV779929
Length = 484
Score = 33.1 bits (74), Expect = 0.12
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -3
Query: 29 PIRITTRNKITPTYM*DYICNIPTTSTTNNSHVQYPISNFLSHTYLSKSHSIFAMSLVSY 88
P+R +TR P ++ DY V YPI ++S+ LS+ + F +
Sbjct: 278 PLRRSTRAPSLPAHLQDYTMT-----------VHYPIQPYVSYDKLSQPYKAFVSPVAHV 132
Query: 89 TEPKSYDEAIKH 100
EP+ Y + +++
Sbjct: 131 YEPQFYHQPVRY 96
>AV410992
Length = 418
Score = 33.1 bits (74), Expect = 0.12
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 2 TAHTHIPTTSPSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTNNSHV 61
T H H P S +PP + S SP P ++T + + T TT+ NN++
Sbjct: 120 TNHRHNPPPSENPPFSTESDSPTRSSAPGQLTPKTRTT------------TTNNNNNNNR 263
Query: 62 QYP 64
YP
Sbjct: 264 SYP 272
>BP033767
Length = 541
Score = 32.3 bits (72), Expect = 0.20
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +3
Query: 1 FTAHTHIPTTSPSPPITKTSPSP-----PFIPPPIRITTRNKITPTY 42
FT + P+ P+PP SPSP PF P TT+N TP +
Sbjct: 156 FTQGSLPPSQPPNPPPPSPSPSPPNPKYPFSSTPTTTTTQNASTPFF 296
Score = 27.7 bits (60), Expect = 5.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 2 TAHTHIPTT----SPSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTN 57
T HT +P+T P+ IT + S P I PI + N P + ++ +IP ++TT+
Sbjct: 152 TLHTRLPSTLSTPKPTTTITISLTSKPKI--PIFLHPHNHHHPKCLHTFLPHIPISTTTS 325
Query: 58 NS 59
S
Sbjct: 326 FS 331
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 32.3 bits (72), Expect = 0.20
Identities = 31/98 (31%), Positives = 43/98 (43%)
Frame = +2
Query: 2 TAHTHIPTTSPSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTNNSHV 61
T+ P+T SPP T TSPSP PP ++ P+ P T+++ N+H
Sbjct: 233 TSPAFSPSTPSSPPSTTTSPSPT-SPPRSTNGPQSPSAPS------TTPPWTTSSQNTH- 388
Query: 62 QYPISNFLSHTYLSKSHSIFAMSLVSYTEPKSYDEAIK 99
Q P S S + S + S S S T P S + K
Sbjct: 389 QSPPSRTSSPSTSSSTTSAPRSSTRSPTAPPSPPQCTK 502
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 5 THIPTTSPSPPITKTSPSPPFIPP 28
T PT PSPP P+PP PP
Sbjct: 458 TRSPTAPPSPPQCTKPPAPPRAPP 529
>TC12188 similar to GB|AAF48767.2|22832753|AE003506 CG6474-PA {Drosophila
melanogaster;} , partial (6%)
Length = 297
Score = 32.3 bits (72), Expect = 0.20
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2
Query: 5 THIPTTSPSPPITKTSPSPPFIPPPIRI 32
T P TSPSP T SPS PF PPP+ +
Sbjct: 278 TSPPRTSPSPSSTPPSPS-PFRPPPLSV 198
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 31.6 bits (70), Expect = 0.35
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +3
Query: 3 AHTHIPTTSPSPPITKTSPSPPFIPPPIR----ITTRNKITPTYM*DYICNIPTTSTT 56
A T PTT+P PP PP PPP TT TP PT S T
Sbjct: 162 APTQAPTTTPPPPPAAAPAPPPATPPPAATPAPTTTPPAATPAPSASPPAPTPTASPT 335
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 31.6 bits (70), Expect = 0.35
Identities = 27/90 (30%), Positives = 41/90 (45%)
Frame = +2
Query: 2 TAHTHIPTTSPSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTSTTNNSHV 61
T +H+P+ SPS P++ T+ S P P + T T *+ I I STT +SH+
Sbjct: 410 TTSSHLPSPSPSLPLSPTTSSHLPSPTP---SLPFSSTTTTT*EAI-QICIASTTTSSHL 577
Query: 62 QYPISNFLSHTYLSKSHSIFAMSLVSYTEP 91
P F S + + S + + S P
Sbjct: 578 PSPSLPFTSSSSPFPTSSTLLLQITSSPIP 667
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 31.2 bits (69), Expect = 0.46
Identities = 27/94 (28%), Positives = 37/94 (38%), Gaps = 2/94 (2%)
Frame = +1
Query: 2 TAHTHIPTTSPSPPITKTSPSPPFIPPPIRITTRNKITPTYM*DYICNIPTTS--TTNNS 59
T+ T P SP+ P SPSPP PP + + P+TS + S
Sbjct: 250 TSTTQQPKHSPTSPPASPSPSPPSTKPPTAMAS----------------PSTSPLSATKS 381
Query: 60 HVQYPISNFLSHTYLSKSHSIFAMSLVSYTEPKS 93
H P + S T + S+ MS S + P S
Sbjct: 382 HPTPPAAPSASSTPPPTTTSLKTMSSPSSSTPSS 483
>TC11037 weakly similar to GB|AAP12885.1|30017303|BT006236 At3g12920
{Arabidopsis thaliana;}, partial (27%)
Length = 730
Score = 31.2 bits (69), Expect = 0.46
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 6/64 (9%)
Frame = +2
Query: 2 TAHTHIPTTSPSPPITKTSPSPPFIP-PPIRITTRNKI---TP--TYM*DYICNIPTTST 55
TA + TT+P PP SPS +P P+ TT + + TP T + P+TST
Sbjct: 257 TALSPTTTTTPPPPPATVSPSRENVPETPLTTTTTSSLLTRTPATTLSPSSVKISPSTST 436
Query: 56 TNNS 59
T NS
Sbjct: 437 TTNS 448
>AU088795
Length = 482
Score = 30.8 bits (68), Expect = 0.60
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 9 TTSPSPPITKTSPSPPFIPPP 29
+T PSPP + P PP +PPP
Sbjct: 359 STPPSPPSSPPPPPPPXLPPP 421
Score = 26.9 bits (58), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 10 TSPSPPITKTSPSPPFIPPP 29
T+PSP + T PSPP PPP
Sbjct: 341 TAPSP--SSTPPSPPSSPPP 394
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.146 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,859,975
Number of Sequences: 28460
Number of extensions: 166011
Number of successful extensions: 4106
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 3007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3826
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146555.15