BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.7 - phase: 0 /pseudo
(1014 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI417841 67 1e-11
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 51 1e-06
BG662087 30 1.9
TC14482 similar to UP|PSBY_ARATH (O49347) Photosystem II core co... 28 5.6
TC19785 weakly similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (... 28 5.6
BP069435 28 7.3
TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus pro... 28 7.3
BP038233 28 7.3
TC12588 28 7.3
TC8778 similar to UP|O22512 (O22512) Grr1, partial (31%) 28 7.3
TC11560 28 9.6
>BI417841
Length = 617
Score = 67.4 bits (163), Expect = 1e-11
Identities = 41/123 (33%), Positives = 64/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 749 LIFDGAV--NVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRI 806
L FDG+ N +G GAVL G+ + + + TNN EY I+G++ A +
Sbjct: 142 LEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVG-NQTNNQAEYRGLILGLKHAHEQGY 318
Query: 807 KKIVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADAL 866
+ I + GD LV Q++G W+ R+P + + A+ L + F +++HVPR N AD
Sbjct: 319 QHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEADVQ 498
Query: 867 ATL 869
A L
Sbjct: 499 ANL 507
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 50.8 bits (120), Expect = 1e-06
Identities = 25/77 (32%), Positives = 41/77 (52%)
Frame = +2
Query: 791 YEACIMGIEEAIDLRIKKIVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKV 850
Y I+G++ AI K I + GD LV NQ++G W+ ++ + A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 851 ELHHVPRDENQMADALA 867
+++H+PR+ N AD A
Sbjct: 182 KINHIPREYNSEADVQA 232
>BG662087
Length = 373
Score = 30.0 bits (66), Expect = 1.9
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +3
Query: 334 RERWQSQNVCGLPGLEQG*SEG*FPFTSH*CIG**HC*KQGFLLHGQFLRLQSDQDGS*R 393
R W+ +V GL G EQG + + G + G LRL +QD R
Sbjct: 6 RHEWEMAHVGGLHGSEQGMPKRLLSIAKYRQTGGWSVRQ*VAKPDGCLLRLSPNQDAPIR 185
Query: 394 *RKDVFHHTLGCFLLCGDAIWVDKCR 419
* ++ H G LL +++ V++CR
Sbjct: 186 *GQNGLHDRQGKLLLPDNSVRVEECR 263
>TC14482 similar to UP|PSBY_ARATH (O49347) Photosystem II core complex
proteins psbY, chloroplast precursor (L-arginine
metabolising enzyme) (L-AME) [Contains: Photosystem II
protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
(psbY-A2)], partial (55%)
Length = 1006
Score = 28.5 bits (62), Expect = 5.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 846 FFNKVELHHVPRDENQMADALATLSSMINVNGHNTVLVIN 885
+++ L+ R +QMA +AT +MIN NT L+IN
Sbjct: 46 YYSSSHLNRYDRIGSQMAATIATTMAMINSKCLNTKLMIN 165
>TC19785 weakly similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (16%)
Length = 514
Score = 28.5 bits (62), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 938 RFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHE 973
RF L D N+DG++ CV K+ ++ +HE
Sbjct: 82 RFLLGRDYWSFLNYDGLIPCCVGKNSRNQVCPRVHE 189
>BP069435
Length = 423
Score = 28.1 bits (61), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = +3
Query: 253 RFCHVIYYLIFIFWCFFWKNGNIKIQKNRSLFLLKFSKSKVCIYSLKS 300
RFCH Y+ FIF+ FF G I RS ++ + + I +L++
Sbjct: 156 RFCHSS-YIFFIFFFFFPWQGVI*FANCRSYIKMRLNYEAISILTLRN 296
>TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus protein,
partial (16%)
Length = 1243
Score = 28.1 bits (61), Expect = 7.3
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Frame = +1
Query: 972 HEGSFGTHSCGHAKL*RSLRGEE-SFLWW 999
H S+G+H CGH K S G SF+W+
Sbjct: 451 HGTSYGSHCCGHVKAACSGDGSRLSFVWY 537
>BP038233
Length = 508
Score = 28.1 bits (61), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = +1
Query: 255 CHVIYYLIFIFW---CFFWKNGNI 275
C++I Y+ + W CF W++GNI
Sbjct: 280 CNIIKYISNVCWMIECFLWQHGNI 351
>TC12588
Length = 878
Score = 28.1 bits (61), Expect = 7.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 259 YYLIFIFWCFFWKN 272
YYLI+I+WC++ N
Sbjct: 222 YYLIYIYWCYYLHN 263
>TC8778 similar to UP|O22512 (O22512) Grr1, partial (31%)
Length = 877
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPA 670
LRF+ + +H + + TTW +S + P++ KPA
Sbjct: 505 LRFSTSREHPCNLTSDKTTWSVSLVQPLRLTLTKPA 398
>TC11560
Length = 538
Score = 27.7 bits (60), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 966 KLMHEIHEGSFGTHSCGH 983
K H++ EG THSCGH
Sbjct: 176 KADHKLEEGKGSTHSCGH 123
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.352 0.157 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,671,952
Number of Sequences: 28460
Number of extensions: 273410
Number of successful extensions: 2453
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2451
length of query: 1014
length of database: 4,897,600
effective HSP length: 99
effective length of query: 915
effective length of database: 2,080,060
effective search space: 1903254900
effective search space used: 1903254900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146554.7