TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146552.5 - phase: 0 /pseudo
         (43 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV767028                                                               26  2.0
TC9305 weakly similar to UP|Q7XL02 (Q7XL02) OJ000315_02.15 prote...    25  4.4

>AV767028 
          Length = 514

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 20  MPAAASAVASWAALEAVADA 39
           +PA A  VA+ AALEA ADA
Sbjct: 472 VPAEAGMVATVAALEAAADA 413


>TC9305 weakly similar to UP|Q7XL02 (Q7XL02) OJ000315_02.15 protein,
           partial (56%)
          Length = 566

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 20  MPAAASAVASWAALEAVADACSTA 43
           +P  A   A WAAL  V  A STA
Sbjct: 256 VPMKAPMAAPWAALVVVTTAASTA 185


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.116    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 712,782
Number of Sequences: 28460
Number of extensions: 5103
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of query: 43
length of database: 4,897,600
effective HSP length: 19
effective length of query: 24
effective length of database: 4,356,860
effective search space: 104564640
effective search space used: 104564640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)