BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.5 + phase: 0
(606 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17973 similar to UP|Q9LIM6 (Q9LIM6) Gb|AAF16571.1, partial (24%) 187 5e-48
AW719754 121 4e-28
BP038948 111 3e-25
TC11048 similar to UP|O04343 (O04343) At2g30520 protein, partial... 107 6e-24
AV777782 94 6e-20
BP053877 92 3e-19
AV409178 91 5e-19
AV415011 91 7e-19
BE122477 87 8e-18
AV766903 79 3e-15
AV409560 72 3e-13
TC12833 similar to UP|Q9LYW0 (Q9LYW0) Photoreceptor-interacting ... 46 1e-11
BP064430 63 1e-10
BP042810 54 1e-09
BP077118 58 5e-09
BI420384 58 5e-09
TC18871 weakly similar to UP|O04344 (O04344) At2g30510 protein, ... 54 7e-08
AV407064 52 4e-07
TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partia... 50 1e-06
AV417132 46 2e-05
>TC17973 similar to UP|Q9LIM6 (Q9LIM6) Gb|AAF16571.1, partial (24%)
Length = 919
Score = 187 bits (474), Expect = 5e-48
Identities = 91/196 (46%), Positives = 135/196 (68%), Gaps = 1/196 (0%)
Frame = +3
Query: 3 RYVASELASDIIVSIGDTKFYLHKFPLISKSSHLQKLISLNNEENINEI-QISDIPGGAS 61
R V+SE+ SD+I+ + T++ LHKFPL+SK LQKL S + + + ++I Q+ D PGG
Sbjct: 336 RSVSSEVCSDLIIQVRGTRYLLHKFPLLSKCLRLQKLCSESPDSSPHQIVQLPDFPGGIE 515
Query: 62 AFEICAKFCYGMTVTLNAYNVIATRCAAEYLGMHENIEKGNLLFKIDVFLSSSIFRSWKD 121
AFE+CAKFCYG+T+TL+ YN++A RC+AEYL M E +EKGNL+ K+DVF +S I R WKD
Sbjct: 516 AFELCAKFCYGITITLSPYNIVAARCSAEYLQMTEEVEKGNLIQKLDVFFNSCILRGWKD 695
Query: 122 SIILLQTTKSMSPLDEEQKVVNRCIESIANKACVDVSKVDWSYTYNRKKLPEENGFESNQ 181
SI+ LQTTK++ E+ ++ +RCIE+IA+K +KV S++++R+ + + +
Sbjct: 696 SIVSLQTTKALHLWSEDLEITSRCIEAIASKVLSHPTKVSLSHSHSRRVRDDVSSCNETE 875
Query: 182 NGVRTRNVPKDWWVED 197
+ N K WW ED
Sbjct: 876 SVRHKSN--KGWWGED 917
>AW719754
Length = 485
Score = 121 bits (303), Expect = 4e-28
Identities = 68/149 (45%), Positives = 90/149 (59%)
Frame = +2
Query: 321 TMYDVGIVQKIVREFLMKDHNSEIELVGGGELEGIRKPGILSDASKLMVAKLIDGYLAEI 380
T+YDV V +I+ FL L G +EG S ++V KLIDGYL+EI
Sbjct: 29 TLYDVDCVARILSHFLEG-------LEAGNTVEG--GDAAARSPSLMLVGKLIDGYLSEI 181
Query: 381 AKDPNLPLLNFVNLAELVSRISRPSHDGLYRAIDTYLKEHPGISKGEKKSICQLMDCRKL 440
A D NL F A + +R DGLYRA+D YLK HP +S+ E++ IC L+DC+KL
Sbjct: 182 ASDANLKPERFYTFAISLPDQARLFDDGLYRAVDVYLKAHPWVSESEREKICGLLDCQKL 361
Query: 441 SVDASLHAVQNERLPTRVIVQVLHFEQVR 469
+++A HA QNERLP R +VQVL FEQ++
Sbjct: 362 TLEACTHAAQNERLPLRAVVQVLFFEQLQ 448
>BP038948
Length = 508
Score = 111 bits (278), Expect = 3e-25
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Frame = +3
Query: 4 YVASELASDIIVSIGDTKFYLHKFPLISKSSHLQKLISLNNEENINE------IQISDIP 57
+ + L SDI+V + D F+LHK PL+SKS +LI+ ++E E + ++D P
Sbjct: 84 FCTTGLPSDIVVQLDDMNFHLHKIPLMSKSRKFHQLITEQDDEEEGEDVEHLHLALADFP 263
Query: 58 GGASAFEICAKFCYGMTVTLNAYNVIATRCAAEYLGMHENIEKGNLLFKIDVFLSSSIFR 117
GG+ AFE+ KFCY + + L++ NV + RCA E+L M E + NL+ K + FLS S+
Sbjct: 264 GGSEAFELAVKFCYDVKIDLSSSNVASLRCAGEFLEMTEEYSEDNLISKTEQFLSRSVLN 443
Query: 118 SWKDSIILLQTTKSMSPLDE 137
S KDSI LQ+ + + PL E
Sbjct: 444 SVKDSITALQSCERLMPLAE 503
>TC11048 similar to UP|O04343 (O04343) At2g30520 protein, partial (79%)
Length = 514
Score = 107 bits (267), Expect = 6e-24
Identities = 51/139 (36%), Positives = 84/139 (59%)
Frame = +2
Query: 6 ASELASDIIVSIGDTKFYLHKFPLISKSSHLQKLISLNNEENINEIQISDIPGGASAFEI 65
+ E+ +D+IV +G+ F LHKF L+ KS++++KLI E + I +SDIPGGA FE
Sbjct: 98 SQEIPTDVIVQVGEASFCLHKFMLVKKSNYIRKLIWEAEESELTTINLSDIPGGAGTFEK 277
Query: 66 CAKFCYGMTVTLNAYNVIATRCAAEYLGMHENIEKGNLLFKIDVFLSSSIFRSWKDSIIL 125
AKFCYG+ + +NV RCAAE+L M + +L + + FLS F + ++ +
Sbjct: 278 AAKFCYGVNFEITVHNVAVLRCAAEFLEMTDEYCDNSLAGRTEDFLSQVAFFTLTGAVTV 457
Query: 126 LQTTKSMSPLDEEQKVVNR 144
L++ + + P+ ++ +V R
Sbjct: 458 LKSCRHLLPIADDLSIVER 514
>AV777782
Length = 424
Score = 94.0 bits (232), Expect = 6e-20
Identities = 58/150 (38%), Positives = 81/150 (53%), Gaps = 2/150 (1%)
Frame = +1
Query: 302 QLEEASVNDILIKAPDG-EITMYDVGIVQKIVREFLMKDHNSEIELVGGGE-LEGIRKPG 359
Q EEA+V+D+L + + YD +V ++ F+ V L IRK G
Sbjct: 7 QFEEATVSDLLYPSTSPLDQNFYDTELVLAVLESFVKFWKRISPGAVDNRHFLRSIRKVG 186
Query: 360 ILSDASKLMVAKLIDGYLAEIAKDPNLPLLNFVNLAELVSRISRPSHDGLYRAIDTYLKE 419
KLID YL +A+D N+P+ FV LAE V I R HD LYRAI+ YLK
Sbjct: 187 -----------KLIDSYLQVVARDENMPVQKFVALAETVPAIGRIEHDDLYRAINIYLKV 333
Query: 420 HPGISKGEKKSICQLMDCRKLSVDASLHAV 449
HP +SK +KK +C+ ++C++LS + HAV
Sbjct: 334 HPDLSKVDKKCLCRSLECQRLSPEVCAHAV 423
>BP053877
Length = 438
Score = 91.7 bits (226), Expect = 3e-19
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -3
Query: 557 LKSKKSFIKLWASKGGHGENSGSDSSESIGSVNPEEVKSTPSRNRRNSVS 606
LKSKKSFIKLWAS GG GENSGSDSSESIGS NPEE KSTPSRNRR+SVS
Sbjct: 436 LKSKKSFIKLWASXGGQGENSGSDSSESIGSANPEEAKSTPSRNRRHSVS 287
>AV409178
Length = 309
Score = 90.9 bits (224), Expect = 5e-19
Identities = 45/89 (50%), Positives = 61/89 (67%)
Frame = +1
Query: 362 SDASKLMVAKLIDGYLAEIAKDPNLPLLNFVNLAELVSRISRPSHDGLYRAIDTYLKEHP 421
S + + V+KL+D YLAEIA D NL L F+ +AE + +R HDGLYRAID YLK H
Sbjct: 43 SQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYRAIDIYLKAHQ 222
Query: 422 GISKGEKKSICQLMDCRKLSVDASLHAVQ 450
G+S +KK +C+++D +KLS +A HA Q
Sbjct: 223 GLSDLDKKKLCKMIDFQKLSHEAGAHAAQ 309
>AV415011
Length = 238
Score = 90.5 bits (223), Expect = 7e-19
Identities = 48/79 (60%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +2
Query: 342 SEIELVGGGELEGIRKPGILSDASK-LMVAKLIDGYLAEIAKDPNLPLLNFVNLAELVSR 400
S+ E + EL+ IR P + S+ SK + V KL+DGYLAEIA+DP+LP+ NFV+LAELVS
Sbjct: 2 SQSESLLEDELQEIRSPRMASNPSKKIKVVKLVDGYLAEIARDPSLPVSNFVDLAELVSS 181
Query: 401 ISRPSHDGLYRAIDTYLKE 419
R +HDGLYRAID YLKE
Sbjct: 182 FPRQTHDGLYRAIDMYLKE 238
>BE122477
Length = 420
Score = 87.0 bits (214), Expect = 8e-18
Identities = 52/129 (40%), Positives = 71/129 (54%)
Frame = +3
Query: 322 MYDVGIVQKIVREFLMKDHNSEIELVGGGELEGIRKPGILSDASKLMVAKLIDGYLAEIA 381
+Y+ ++ IV+ F+ + N + L+ + S S VAKLID Y+AEIA
Sbjct: 45 LYNTDCIEHIVQHFIRAESN--LTAFSPSSLD--QHASSPSSESSKKVAKLIDSYIAEIA 212
Query: 382 KDPNLPLLNFVNLAELVSRISRPSHDGLYRAIDTYLKEHPGISKGEKKSICQLMDCRKLS 441
D NL LAE + SR HDGLYRA+D Y K HP +S EK+ +C ++D RKLS
Sbjct: 213 SDVNLKPGKIRALAEGLPESSRLLHDGLYRALDIYFKAHPWLSDKEKEELCNIIDYRKLS 392
Query: 442 VDASLHAVQ 450
+ A HA Q
Sbjct: 393 IHACAHASQ 419
>AV766903
Length = 548
Score = 78.6 bits (192), Expect = 3e-15
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 1/165 (0%)
Frame = -3
Query: 255 IVETIVKL-LPSDKGSVSCRFLVKLLKAVIFVESEDRIRDVLVKRIGQQLEEASVNDILI 313
I+E ++ + D+ S+SC+ L +L+ + + R+ L IG L++A+++++LI
Sbjct: 540 IIEMVIDMHYYMDQSSISCKTLFGILRVTLSLSISKSSRNKLENMIGSHLDQATLDNLLI 361
Query: 314 KAPDGEITMYDVGIVQKIVREFLMKDHNSEIELVGGGELEGIRKPGILSDASKLMVAKLI 373
+P+G +YDV +V + ++ FL + ++ + +RK VA+LI
Sbjct: 360 PSPNGISYLYDVNLVLRFLKAFLRQGNSLPTPI-------QMRK-----------VARLI 235
Query: 374 DGYLAEIAKDPNLPLLNFVNLAELVSRISRPSHDGLYRAIDTYLK 418
D YLAEIA DP L F+ L + +R S+D LY A+D YL+
Sbjct: 234 DLYLAEIAPDPCLKASKFLALVTALPDSARDSYDELYHAMDMYLE 100
>AV409560
Length = 375
Score = 72.0 bits (175), Expect = 3e-13
Identities = 31/68 (45%), Positives = 49/68 (71%)
Frame = +3
Query: 6 ASELASDIIVSIGDTKFYLHKFPLISKSSHLQKLISLNNEENINEIQISDIPGGASAFEI 65
+ E+ SD+ V+IG+ + LHKF L++KS+++++LI + ++ I +SDIPGG AFE
Sbjct: 153 SQEIPSDVTVTIGEADYSLHKFMLVAKSNYIRELIIEAEDSDLTRIDLSDIPGGQEAFEK 332
Query: 66 CAKFCYGM 73
AKFCYG+
Sbjct: 333 AAKFCYGV 356
>TC12833 similar to UP|Q9LYW0 (Q9LYW0) Photoreceptor-interacting
protein-like (Non-phototropic hypocotyl-like protein),
partial (15%)
Length = 734
Score = 45.8 bits (107), Expect(2) = 1e-11
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +2
Query: 413 IDTYLKEHPGISKGEKKSICQLMDCRKLSVDAS 445
ID YLK HP ++ EK+ IC+LM+C+KLS++AS
Sbjct: 32 IDIYLKTHPWMTDSEKEQICRLMNCQKLSLEAS 130
Score = 40.4 bits (93), Expect(2) = 1e-11
Identities = 22/45 (48%), Positives = 30/45 (65%), Gaps = 2/45 (4%)
Frame = +1
Query: 447 HAVQNERLPTRVIVQVLHFEQ--VRTAASSGTSTPDIAKGIKDLS 489
HA QNERLP RV+VQVL FEQ +RT+ + T + + ++LS
Sbjct: 133 HAAQNERLPLRVVVQVLFFEQLKLRTSVAGWFFTSENLENTQNLS 267
>BP064430
Length = 464
Score = 63.2 bits (152), Expect = 1e-10
Identities = 33/60 (55%), Positives = 41/60 (68%)
Frame = -3
Query: 547 KAVIGKMKGLLKSKKSFIKLWASKGGHGENSGSDSSESIGSVNPEEVKSTPSRNRRNSVS 606
K K KG L SKK F KLW+S+ +GE S SD+SES S EE KSTP+R+RR+S+S
Sbjct: 462 KVAANKTKGFLMSKKIFSKLWSSRERNGEISSSDTSESPASTVVEETKSTPTRSRRHSLS 283
>BP042810
Length = 503
Score = 53.5 bits (127), Expect(2) = 1e-09
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = -3
Query: 50 EIQISDIPGGASAFEICAKFCYGMTVTLNAYNVIATRCAAEYLGM 94
++ +D PGG+ AFE+ AKFCYG+ L+ NV + RCA E+L M
Sbjct: 135 QVTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAGEFLEM 1
Score = 26.2 bits (56), Expect(2) = 1e-09
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2
Query: 4 YVASELASDIIVSIGDTKFYLHK 26
+ + L SDI+V + D F+LHK
Sbjct: 313 FCTTGLPSDIVVEVDDMTFHLHK 245
>BP077118
Length = 354
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/102 (31%), Positives = 50/102 (48%), Gaps = 31/102 (30%)
Frame = +3
Query: 3 RYVASELASDIIVSIGDTKFYLHKFP-------------------------------LIS 31
R + E+ SD+ V+IG+ + LHK P L++
Sbjct: 39 RVFSQEIPSDVTVTIGEADYSLHKVPKYALHGKLMMLFLYFQFKMVQILIRNC*QFMLVA 218
Query: 32 KSSHLQKLISLNNEENINEIQISDIPGGASAFEICAKFCYGM 73
KS+++++LI + ++ I +SDIPGG AFE AKFCYG+
Sbjct: 219 KSNYIRELIIEAEDSDLTRIDLSDIPGGQEAFEKAAKFCYGV 344
>BI420384
Length = 319
Score = 57.8 bits (138), Expect = 5e-09
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +3
Query: 251 KHRLIVETIVKLLPSDKGSVSCRFLVKLLKAVIFVESEDRIRDVLVKRIGQQLEEASVND 310
K R +ET+V +LP +K +V C FL++LL+ V E R L KRI QL++AS+ +
Sbjct: 54 KKRFFMETLVGVLPPEKDAVPCNFLLRLLRTANMVGVEGSYRQELEKRISWQLDQASLKE 233
Query: 311 ILIKAPDGEI-TMYDVGIVQKIVREFL 336
++I + T+ DV +V ++V+ F+
Sbjct: 234 LVIPSFSHTCGTLLDVELVIRLVKRFV 314
>TC18871 weakly similar to UP|O04344 (O04344) At2g30510 protein, partial
(34%)
Length = 565
Score = 53.9 bits (128), Expect = 7e-08
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Frame = +2
Query: 219 QSNDVIGEALKAYAYRKLPNFSKGMIPCEDVSK------HRLIVETIVKLLPSDKGSVSC 272
Q +D AL YA R + + + I D S+ R ++E+IV+L PS+K
Sbjct: 95 QIHDAEPTALITYAERAIRDLTGKGIRSSDSSETDSRVNQRKLLESIVELFPSEKTVFPM 274
Query: 273 RFLVKLLKAVIFVESEDRIRDVLVKRIGQQLEEASVNDILIK--APDGEITMYDVGIVQK 330
FL LL+ I + + + L KRI LE +V+D+L+ + DG+ ++D+ V+K
Sbjct: 275 HFLCCLLRCAIHLRASGTCKSDLEKRISLILEHVTVDDLLVLSFSYDGD-KLFDLESVRK 451
Query: 331 IVREFLMKDHNSEIELVGGGELEGIRKPGILSDASKLMVAKLIDGY 376
IV F+ K+ + + G A+ VAK +D Y
Sbjct: 452 IVSGFVEKEKSGAVPSPGESRES--------CSAATQGVAKTVDAY 565
>AV407064
Length = 377
Score = 51.6 bits (122), Expect = 4e-07
Identities = 28/79 (35%), Positives = 46/79 (57%)
Frame = +1
Query: 235 KLPNFSKGMIPCEDVSKHRLIVETIVKLLPSDKGSVSCRFLVKLLKAVIFVESEDRIRDV 294
+L + G PCE+ K +++E I +LLP KG V +FL LL+ + + +
Sbjct: 112 RLTQMALGSPPCEEDQK--ILLEEINRLLPLQKGLVQTKFLFGLLRTAMILRVDSSCISD 285
Query: 295 LVKRIGQQLEEASVNDILI 313
L KRIG QL++A++ D+L+
Sbjct: 286 LEKRIGMQLDQANLEDLLM 342
>TC18095 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partial (8%)
Length = 638
Score = 49.7 bits (117), Expect = 1e-06
Identities = 30/91 (32%), Positives = 43/91 (46%), Gaps = 21/91 (23%)
Frame = +3
Query: 4 YVASELASDIIVSIGDTKFYLHKFPLISKSSHLQKLISLNNE------------------ 45
+ + L SD++V + D F+LHKFPL+SKS L LI+ E
Sbjct: 360 FCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTLPQQQQEEDEDED 539
Query: 46 ---ENINEIQISDIPGGASAFEICAKFCYGM 73
E ++ +D PGG+ A E AKF G+
Sbjct: 540 EIVEEQLQVTFTDFPGGSDALERAAKFGDGV 632
>AV417132
Length = 336
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +1
Query: 55 DIPGGASAFEICAKFCYGM-TVTLNAYNVIATRCAAEYLGMHENIEKGNLLFK 106
D PGGA FE+ +FCY T ++ N++ + CAAEY+ M+E++ + L K
Sbjct: 166 DFPGGAEGFELMLRFCYNNGTADISPSNLLLSHCAAEYMEMNESVAGVSNLLK 324
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,800,344
Number of Sequences: 28460
Number of extensions: 108038
Number of successful extensions: 414
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of query: 606
length of database: 4,897,600
effective HSP length: 96
effective length of query: 510
effective length of database: 2,165,440
effective search space: 1104374400
effective search space used: 1104374400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146551.5