BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.11 + phase: 0
(339 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%) 39 0.001
TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (... 37 0.004
TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Trop... 35 0.024
TC18503 similar to UP|Q9DTD4 (Q9DTD4) ORF1, partial (3%) 34 0.040
TC17499 weakly similar to UP|O82212 (O82212) At2g23820 protein, ... 33 0.068
TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mt... 33 0.068
BP030058 33 0.089
TC12258 weakly similar to UP|O50458 (O50458) PGRS_FAMILY protein... 33 0.089
BP033767 33 0.089
TC10280 similar to UP|AAR20741 (AAR20741) At4g22560, partial (33%) 32 0.15
AV410336 32 0.15
AW720339 32 0.20
TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid d... 32 0.20
TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fet... 32 0.20
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 32 0.20
TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%) 31 0.26
BP038135 31 0.26
AW720347 31 0.26
TC19047 similar to UP|Q9FGH2 (Q9FGH2) Gb|AAC63835.1, partial (22%) 31 0.34
BP078507 31 0.34
>TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)
Length = 2120
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 117 NYLKSHPSHKNLQGKSMIDYDYLKIV---VGGGVSSGNNSIALDPEDTDATTFEQESESF 173
N L+ HPS++ + ++ + +IV V GNNS+ D D+ Q +
Sbjct: 814 NRLRKHPSNEVRRLVKLLVRKWKEIVDEWVKLNPQKGNNSLMADG-DSPLQKTTQNGQHH 990
Query: 174 GMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQ-PTPSPNQPTPSPHFSLNSEAPIEK 228
+ DF+Y PN + + + P P P +P +PTPSP + + P K
Sbjct: 991 QIPDFAYSPNPHNGSSGSDRNNSEAEPKPKVIPRQTPPKPTPSPSVTTLAFTPQNK 1158
Score = 29.3 bits (64), Expect = 0.99
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 177 DFSYDPNSDTFIAPDNYEPAYQPPSPNQ-PTPSPNQPTPSPHFSLNSEAPIEKRNRHKRN 235
DF+ PN + + + P P P +P +PTPSP + + P K+ + +
Sbjct: 1179 DFA*SPNPHNGSSGSDRNNSEAEPKPKVIPRQTPPKPTPSPSVTTLAFTPQNKQREQRNS 1358
Query: 236 RSEYER 241
E E+
Sbjct: 1359 NFEAEK 1376
>TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (33%)
Length = 898
Score = 37.4 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = +1
Query: 190 PDNYEPAYQPPSPNQPTP-SPNQPTPSPHFSLNSEAPIEKRNR 231
P++ P++ SP+ P P SP PTP PH ++S A + RNR
Sbjct: 316 PNSASPSFATSSPSSPPPSSPTTPTP-PHSRISSSATLNSRNR 441
>TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Tropoelastin),
partial (3%)
Length = 517
Score = 34.7 bits (78), Expect = 0.024
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 155 ALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPS--PNQP 212
AL D+ F+ E + F ED S DP S + P +P P+ QP PS PN P
Sbjct: 87 ALVHADSHFEGFDAEDDDF--EDSSIDPTS---LRPPPSQPLTTNPTNTQPPPSNLPNSP 251
Query: 213 TPSP 216
P P
Sbjct: 252 PPPP 263
>TC18503 similar to UP|Q9DTD4 (Q9DTD4) ORF1, partial (3%)
Length = 504
Score = 33.9 bits (76), Expect = 0.040
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSE 238
S+ ++ T ++P +P +QPPSP+ P P ++ H L S+ P+ H R S+
Sbjct: 19 SFSFSAATVVSPS--QPRHQPPSPSPPPPQHHR----IHHLLQSQHPVHNLASHFRASSQ 180
Query: 239 YER 241
+R
Sbjct: 181 RQR 189
>TC17499 weakly similar to UP|O82212 (O82212) At2g23820 protein, partial
(40%)
Length = 502
Score = 33.1 bits (74), Expect = 0.068
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 188 IAPDNYEPAYQPPSPNQPTPSPNQP-TPSPHFSLNSEAPIEKRNRHKRNRS 237
I P++ A PPSP+ P P PN TP P S+ S + + R R ++ S
Sbjct: 138 IIPNSSSSATLPPSPSAPIPPPNNTLTPLPLSSIFSLSATDSRPRRGKDGS 290
>TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mtc923,
partial (17%)
Length = 486
Score = 33.1 bits (74), Expect = 0.068
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 159 EDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPN-QPTPSPNQPTPSPH 217
+D D T + + D N + ++P +P SP+ P+PSP++ +PSP
Sbjct: 146 DDDDNTLINPTTTATATAAADDDENENDAVSPS------EPQSPDFYPSPSPSR-SPSPS 304
Query: 218 FSLNSEAPIEKRNRHKRNRSEYERSSG 244
S S AP E R+R + SSG
Sbjct: 305 HS-PSRAPYELRSRRSLGKKPSSSSSG 382
>BP030058
Length = 455
Score = 32.7 bits (73), Expect = 0.089
Identities = 16/35 (45%), Positives = 17/35 (47%)
Frame = -1
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
P DT P P+ PP P P PSP P PSP
Sbjct: 434 PCGDTCGDPPPPPPSPSPPPPPLPCPSPPPPPPSP 330
>TC12258 weakly similar to UP|O50458 (O50458) PGRS_FAMILY protein (PE_PGRS
family protein), partial (6%)
Length = 471
Score = 32.7 bits (73), Expect = 0.089
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 198 QPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNR 231
+PP P P+P+P P P P N A +E + R
Sbjct: 400 EPPPPPPPSPTPEPPFPPPAEEANEAAELETQQR 299
>BP033767
Length = 541
Score = 32.7 bits (73), Expect = 0.089
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 195 PAYQPPSPNQPTPSPNQPTPSPHFS 219
P QPP+P P+PSP+ P P FS
Sbjct: 174 PPSQPPNPPPPSPSPSPPNPKYPFS 248
Score = 26.6 bits (57), Expect = 6.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 190 PDNYEPAYQPPSPNQPTPSPNQP---TPSPHFSLNSEAP 225
P + P PPSP+ P+P P TP+ + N+ P
Sbjct: 174 PPSQPPNPPPPSPSPSPPNPKYPFSSTPTTTTTQNASTP 290
Score = 26.2 bits (56), Expect = 8.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Frame = +1
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPT--------PSPHFSLNSEAP 225
P P PPS + P+PN PT PSP S +S +P
Sbjct: 337 PSPPSPPTSPPSSSLKPPNPNPPTSSSASPLPPSPAPSPSSLSP 468
>TC10280 similar to UP|AAR20741 (AAR20741) At4g22560, partial (33%)
Length = 731
Score = 32.0 bits (71), Expect = 0.15
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -1
Query: 180 YDPNSDTFIAPDNYEP--AYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
+DP+S+T +P ++ A+ PP+P P+P+ +P+P PH + + P
Sbjct: 266 WDPSSETS-SPHSHRQHNAHSPPNPRSPSPTRPEPSP-PHDTPRTATP 129
>AV410336
Length = 358
Score = 32.0 bits (71), Expect = 0.15
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 3/42 (7%)
Frame = +1
Query: 184 SDTFIAPDNYEPAYQPPSPNQPTPSPNQPT---PSPHFSLNS 222
S + AP + P PP+PN +PS + PT PSPH NS
Sbjct: 43 STSSTAPPPHAPP--PPTPNPKSPSSSSPTPTSPSPHSGRNS 162
>AW720339
Length = 393
Score = 31.6 bits (70), Expect = 0.20
Identities = 20/45 (44%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Frame = -2
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQP-TPSPHFSLNS 222
S+ P S P N +P QP SP Q PSP P PSPH++ S
Sbjct: 308 SHSPTSSEQAQPQNEQP--QPHSP-QSHPSPCSPWQPSPHYTSRS 183
>TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid
dioxygenase4, partial (22%)
Length = 663
Score = 31.6 bits (70), Expect = 0.20
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = -1
Query: 185 DTFIAPDNY-EPAYQPPSPNQPTPSPNQPT-PSPHFSLNSEA--------PIEKRNRHKR 234
+T AP + P QPP+P PSP T PSPH + NS + P + R
Sbjct: 339 ETRTAPSSEASPPPQPPAPATEHPSPKTSTPPSPHHARNSPSTHHPPLPPPPPPTQKTAR 160
Query: 235 NRSEYERSS 243
RS R+S
Sbjct: 159 RRSNPRRTS 133
>TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fetuin-like
protein, partial (6%)
Length = 582
Score = 31.6 bits (70), Expect = 0.20
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 186 TFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEY 239
+ +A D+ PA PP P PSP P+PSP S +S + ++ ++ ++Y
Sbjct: 345 SILADDSVTPAPPPPPPPLSPPSPT-PSPSPSPSPSSSSTLKDDVNVEKELADY 503
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 31.6 bits (70), Expect = 0.20
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Frame = +1
Query: 188 IAPDNYEPA---------YQPPSPNQPTPSPNQPTPSP 216
+ PD ++P +QPPSP P+P QP PSP
Sbjct: 535 LLPDPFQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSP 648
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 180 YDPNSDTFIAPDNYEPAYQPPS--PNQPTPSPNQPTPSPHF 218
+ P S + P+ ++P PP PN P P++ PSP F
Sbjct: 589 FQPPSPPPLIPNPFQPPPSPPPFIPNPFQPPPSKQPPSPLF 711
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 180 YDPNSDTFIAPDNYEPAYQPP---SPNQPTPSPNQPTPSPHFSLNSEAP 225
+ P S + P+ ++P PP +P QP PSP P+P S+ P
Sbjct: 550 FQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSPPPFIPNPFQPPPSKQP 696
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 8/37 (21%)
Frame = +1
Query: 188 IAPDNYEPA--------YQPPSPNQPTPSPNQPTPSP 216
+ P+ ++P+ +QPPSP P+P QP PSP
Sbjct: 499 LIPNPFQPSPPPLLPDPFQPPSPPPLFPNPFQP-PSP 606
Score = 26.2 bits (56), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 188 IAPDNYEPAYQPPSPNQPTPSPNQPTP 214
+ P+ ++P P+P QP+P P P P
Sbjct: 469 LIPNPFQPPPLIPNPFQPSPPPLLPDP 549
Score = 26.2 bits (56), Expect = 8.4
Identities = 18/52 (34%), Positives = 19/52 (35%)
Frame = +1
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRN 230
S P S F P P PP P P P P P P F PI +N
Sbjct: 685 SKQPPSPLFPFPPIVIPGLTPPPP-PPPPPPFFPPFPPLFPPPGRPPISTKN 837
>TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%)
Length = 555
Score = 31.2 bits (69), Expect = 0.26
Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Frame = +1
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSD---TFIAPDNYE------ 194
GG + + + +L PE T ES S DP+S TF +
Sbjct: 1 GGNMVTHHLVPSLTPESNHMLTTTTNPESSQTLRESLDPHSQPPFTFQPRSPLQLLRIPT 180
Query: 195 PAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNR----HKRNRSEYERSSG 244
P P P QP P P P P P L PI R H R + RS+G
Sbjct: 181 PRRSLPLPRQPWPRPENPQPLP--QLVPHRPIHARTHLPPSHARVSLPHRRSNG 336
>BP038135
Length = 561
Score = 31.2 bits (69), Expect = 0.26
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Frame = -1
Query: 193 YEPAYQPPSPNQPTPSPNQPTPSPHFSL------------NSEAPIEKRNRHKRNRSEYE 240
Y P Q PSP T S N SP + NS AP + +N+ K R +
Sbjct: 489 YSPPLQAPSPADQTISQNTLKDSPAAKVAGSGKRR*ILPPNSAAPDKIKNKQKSKRKRKK 310
Query: 241 RSSGVVGINNQGPAMENLSSSIGTIVVHFEKMSNMMEKREKDRELKNNIW 290
+ + ++ AM+ + + E+M +++E++RE N +W
Sbjct: 309 KK-----MKHELVAMQKPLKTENSRFSWNERMQE--QEQERERE*MNGVW 181
>AW720347
Length = 423
Score = 31.2 bits (69), Expect = 0.26
Identities = 19/62 (30%), Positives = 27/62 (42%)
Frame = +3
Query: 161 TDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSL 220
T + S FS S T +P + + PPSP+ P +P P+PS S+
Sbjct: 27 TSSVRISSSETSATRRRFSKPAPSTTTTSPTSSPSSAPPPSPSSPNGAPASPSPSRR-SV 203
Query: 221 NS 222
NS
Sbjct: 204 NS 209
>TC19047 similar to UP|Q9FGH2 (Q9FGH2) Gb|AAC63835.1, partial (22%)
Length = 473
Score = 30.8 bits (68), Expect = 0.34
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 199 PPSPN---QPTPSPNQPTPSPHFSLNSEAPIEKRN 230
P +P+ P+PS + T S H SL+S+ PIE +N
Sbjct: 106 PKNPHLSLSPSPSQHNTTCSKHSSLSSQTPIETKN 210
>BP078507
Length = 414
Score = 30.8 bits (68), Expect = 0.34
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 186 TFIAPDNYEPAYQPPSPNQPTPSPNQPTPS-PHFSLNSEAP 225
T + P + P+ PP P+ P P P +P+ PH +S +P
Sbjct: 177 TLLQPTSDTPSPSPPPPSSPNPPPPHHSPNPPHPPSSSPSP 55
Score = 29.6 bits (65), Expect = 0.76
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -1
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
P +P PSP+ P PS P P PH S N P
Sbjct: 180 PTLLQPTSDTPSPSPPPPSSPNP-PPPHHSPNPPHP 76
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,871,507
Number of Sequences: 28460
Number of extensions: 95412
Number of successful extensions: 2288
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of query: 339
length of database: 4,897,600
effective HSP length: 91
effective length of query: 248
effective length of database: 2,307,740
effective search space: 572319520
effective search space used: 572319520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146551.11