TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146550.4 - phase: 0 /pseudo
         (322 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16271 similar to GB|AAM15909.1|20257479|AF492660 purple acid p...   115  1e-26
BP073853                                                               29  1.2
BP051340                                                               28  2.1
AI967308                                                               27  4.6
TC8135 similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-binding pr...    27  6.1
TC14907 similar to GB|BAB10858.1|10177467|AB009053 permease 1 {A...    27  6.1
BU494131                                                               27  6.1
BU494484                                                               26  7.9
AV770859                                                               26  7.9

>TC16271 similar to GB|AAM15909.1|20257479|AF492660 purple acid phosphatase
           {Arabidopsis thaliana;} , partial (32%)
          Length = 653

 Score =  115 bits (287), Expect = 1e-26
 Identities = 52/91 (57%), Positives = 69/91 (75%)
 Frame = +1

Query: 189 VLPRESYRAELLKNVDLALVKSKAKWKIVVGHHTIKSVGHHGNTQELEQQLLPILKSNNI 248
           VLPR+ Y + LL+++++AL  S AKWKIVVGHH I+S+GHHG+T+EL +QLLPIL+ NN+
Sbjct: 1   VLPRDKYLSNLLRDLEIALKVSTAKWKIVVGHHPIRSIGHHGDTKELIRQLLPILEENNV 180

Query: 249 DAYINGHDHCLQHIIDNERHGEAISSHGTRK 279
           D YINGHDHCL+HI         ++S G  K
Sbjct: 181 DMYINGHDHCLEHITSTNSQILFLTSGGGSK 273



 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 25/59 (42%), Positives = 31/59 (52%)
 Frame = +2

Query: 258 CLQHIIDNERHGEAISSHGTRK*SFTMTDKDSCLCRSQK*M*MLYSMTFWARFCIDGAY 316
           C   +++  RHG+          SFTMTDKDSCL    K M  L+ M F A+FCI   Y
Sbjct: 245 CS*PVVEVRRHGKETFRIRQMGSSFTMTDKDSCLWSFNKSMPKLFIMIFLAKFCIFRIY 421


>BP073853 
          Length = 386

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
 Frame = -1

Query: 266 ERHGEAISSHGTRK-*SFTMTDKDSCLCRSQK*M*MLYSMTFWARFCIDGAYRKN 319
           +R GE      T++ *  +M DK SC C   + M  L SM F A FC +   + N
Sbjct: 386 QRLGEETFKKRTKEV*ISSMMDKVSCQCN*LRLMQTLSSMMFLAMFCTESFLQSN 222


>BP051340 
          Length = 537

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (63%)
 Frame = -2

Query: 139 SILRQKDSRWVCLRSFILDGGIVEFFFV 166
           SI+  K  RWVCL+ FI +    +FFF+
Sbjct: 89  SIVETK*LRWVCLQVFIYNVLTEKFFFI 6


>AI967308 
          Length = 443

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 149 VCLRSFILDGGIVEFFFVDTTPFIEKYFTDPKEHTYDWNGVLPRESYRAEL-------LK 201
           +CL+ F L+   +EF    TT  IEK  T P E     +   P ++ + E+       LK
Sbjct: 52  MCLKLFQLEKVAIEFTKPATTDQIEKE-TQPSE-----DSTTPPDAPKPEIPCVDEMTLK 213

Query: 202 NVDLALVKSKAKWKI 216
           N ++AL+K   + K+
Sbjct: 214 NDEIALLKCNLEEKV 258


>TC8135 similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-binding protein,
            chloroplast precursor (Genomes uncoulped 4), partial
            (51%)
          Length = 1213

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 45   QQSLNFL----VVGDWGRKGNYNQSLVAHQMGIVGDNLNIDFVIS 85
            Q+ LN L    V G W +K    +S +   + +VGD L I+++++
Sbjct: 1135 QEKLNKLQMKNVKGHW*KKRK**KSTIKQPLSLVGDKLTINYILN 1001


>TC14907 similar to GB|BAB10858.1|10177467|AB009053 permease 1 {Arabidopsis
           thaliana;} , partial (28%)
          Length = 734

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 173 EKYFTDPKEHTYDWNGVL 190
           +KY T P  + +DWNG L
Sbjct: 307 KKYATTPATNAFDWNGTL 254


>BU494131 
          Length = 381

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = +2

Query: 68  AHQMGIVGDNLNIDFVISTGDNFYKDGLEGVD 99
           +H +   GD ++I FV+   D+ +  G EGVD
Sbjct: 218 SHDVKYEGDTVHISFVVIKADSPWHYGDEGVD 313


>BU494484 
          Length = 386

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 43  PQQQSLNFLVVGDWGRKGNYNQSLVAHQMGIVGDNLNIDFVISTGDNFY 91
           PQ+  ++F     WG   N+   LVA  + I+G      F+  T  NF+
Sbjct: 232 PQKALISF*RTIRWGNHSNFK*KLVAFCLPIIGATKLYPFINPT*LNFF 86


>AV770859 
          Length = 198

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 148 WVCLRSFILDGGIVEFFFVDTTPFIEK 174
           ++CL  F     IV FF+V +TPFI +
Sbjct: 184 FICLFPFYPTPYIVLFFYVTSTPFIRE 104


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,383,639
Number of Sequences: 28460
Number of extensions: 93119
Number of successful extensions: 507
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of query: 322
length of database: 4,897,600
effective HSP length: 90
effective length of query: 232
effective length of database: 2,336,200
effective search space: 541998400
effective search space used: 541998400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)