BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146549.3 + phase: 0
(461 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 38 0.003
AV414308 38 0.004
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 37 0.007
TC17002 homologue to UP|RIR2_TOBAC (P49730) Ribonucleoside-dipho... 36 0.012
TC15052 36 0.012
TC14150 homologue to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3... 35 0.026
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 35 0.026
TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete 34 0.044
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 34 0.058
TC20232 33 0.099
TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G... 33 0.099
TC8309 UP|O22306 (O22306) Nlj21, complete 33 0.13
TC17922 32 0.17
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 32 0.17
TC17253 similar to UP|Q8SKU2 (Q8SKU2) Tic62 protein precursor, p... 32 0.22
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 32 0.29
TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partia... 32 0.29
TC8142 UP|BAD11133 (BAD11133) Glutamate-rich protein, complete 31 0.49
TC13747 similar to AAL16128 (AAL16128) AT5g47540/MNJ7_13, partia... 30 0.64
TC10312 similar to UP|O49731 (O49731) Glycine-rich cell wall pro... 30 0.64
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +2
Query: 189 EPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLGGEMQPTPTKASKTVPRK 248
+ +QE P + S+ + E + + + T + K G TK++K P K
Sbjct: 32 DESQENVAAPHKESDDDESKSEEEEDKSKAQKKTSKKIVKEGSGSKAGERTKSAKKTPVK 211
Query: 249 TVLENQQTVPEKTVPEQTVPEQD-ASEQVAPDLQTTSDQTTEPEQQPE 295
+ +N P+K+ P+QT E D AS ++ Q S + ++P+
Sbjct: 212 SS-KNVDKTPKKSTPKQTAAEHDSASASLSKSKQPASKKRKTENEKPD 352
>AV414308
Length = 389
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 6/91 (6%)
Frame = +3
Query: 237 TPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQ------TTSDQTTEP 290
TP K S T ++++L+N + P + P P AP TTS ++P
Sbjct: 117 TPQKKSTTSNKESLLQNPPSPPPEASPSSPGPGSPPPPHHAPSSSWSTATATTSPGPSKP 296
Query: 291 EQQPEPPIIDLASDQPSTSHTTQSEPSTIPN 321
Q P + LAS PSTS T + ++ P+
Sbjct: 297 PQSSSPRWVSLAS--PSTSKATATPAASKPS 383
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 37.0 bits (84), Expect = 0.007
Identities = 29/86 (33%), Positives = 37/86 (42%), Gaps = 1/86 (1%)
Frame = +1
Query: 236 PTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPE 295
PT T P K V EN T P + P ASE+ +P +TS T +P+ P
Sbjct: 121 PTSTTTPPPSPTK-VTENPPTAPSTSTKS---PTSSASEEPSPPNPSTS-TTQQPKHSPT 285
Query: 296 PPIIDLASDQPSTS-HTTQSEPSTIP 320
P + PST T + PST P
Sbjct: 286 SPPASPSPSPPSTKPPTAMASPSTSP 363
>TC17002 homologue to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
reductase small chain (Ribonucleotide reductase) (R2
subunit) , partial (45%)
Length = 580
Score = 36.2 bits (82), Expect = 0.012
Identities = 36/141 (25%), Positives = 53/141 (37%)
Frame = -2
Query: 154 IEFSKNRIKLCEKFNLPTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEI 213
+ SKN IKL E + HP EP +Q+P+ TPQRAS+ + ++
Sbjct: 495 LSLSKN-IKLYESATFKSPHPS*TH--EPHHSHSS*TSQKPSDTPQRASQRNGSSPATKS 325
Query: 214 PQQQQESSTIHNLEKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDAS 273
Q S H P+ T+A T T P+QT ++
Sbjct: 324 TPSNQTDSAHHT----------PSHTQAHPT----------------TDPQQTQYTDSSN 223
Query: 274 EQVAPDLQTTSDQTTEPEQQP 294
+P T + +T P Q P
Sbjct: 222 PHSSPPTHTAARRTQTPSQSP 160
>TC15052
Length = 1846
Score = 36.2 bits (82), Expect = 0.012
Identities = 54/237 (22%), Positives = 100/237 (41%), Gaps = 20/237 (8%)
Frame = +3
Query: 99 SKPDIYTQIQSLPSSPSSSSTESDDQPLSQHIDKLLKTKP-------TKLTEYGTLDYE- 150
+ PD+ I ++PS ++ TE D + L++ +DK+ P ++EY + E
Sbjct: 852 ASPDVMA-ISAMPSELDTNCTEKDSESLARDLDKIEFPDPKIANEDHMMVSEYIGIPCEE 1028
Query: 151 ---------STQIEFSKNRIKLCEKFNLPTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRA 201
+T E S+ ++L E+F+ + S P+ + A
Sbjct: 1029 SQCSDSLATTTDTENSEAGVQLVERFSACSVE----------SNGVSSPSMAASSDSSDA 1178
Query: 202 SEVVSEATTSEIPQQQQESSTIHN--LEKHLGGEMQPT-PTKASKTVPRKTVLENQQTVP 258
+ V + A T++ P Q+Q S T ++ GGE + +++ P+ V N +
Sbjct: 1179 ATVTNAAATAKSPNQEQISGTKEKSVVDVKDGGESDSSNGVVNNESFPKPVVSVNIE--- 1349
Query: 259 EKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPEPPIIDLASDQPSTSHTTQSE 315
PE T+ +QD + +Q Q TE + + P +D S P++S + SE
Sbjct: 1350 ----PEPTMVQQDIVDMYMKSMQ----QFTESLAKMKLP-MDFESG-PTSSGNSSSE 1490
>TC14150 homologue to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3
(AT5g35530/MOK9_14), partial (91%)
Length = 1075
Score = 35.0 bits (79), Expect = 0.026
Identities = 32/99 (32%), Positives = 47/99 (47%)
Frame = -3
Query: 47 AALASELETVQYGATLLSQALKNKQASGATSSEPVSKAPEAVHPEAQSSGNSSKPDIYTQ 106
++L S+L T Y T L L NK + +S P SKA + + + S GNS+KP +
Sbjct: 521 SSLGSQLST-DYDLTSLRATLHNK-SQNTIASPPYSKATKKLVAKRLSLGNSTKPPVINL 348
Query: 107 IQSLPSSPSSSSTESDDQPLSQHIDKLLKTKPTKLTEYG 145
+ S ++ +PL H K L P+ LTE G
Sbjct: 347 L-----SIELNTVLRKLKPLLHHRGK-LPNPPSLLTENG 249
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 35.0 bits (79), Expect = 0.026
Identities = 34/151 (22%), Positives = 48/151 (31%)
Frame = +1
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKH 229
PT H +P I P Q+ + + S +S Q Q S +
Sbjct: 88 PT*HHHHPTIRNPTLTPSWVNKQQLLKKSKPGSNSSGSTASSGPTQNQTGSP*KGSTTSS 267
Query: 230 LGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTE 289
G PTP AS +NQ + PE T+ T S +P +
Sbjct: 268 SGAPTPPTPHAASPGASACRSSQNQTSPPETTLTPPTSSAPATSASSSPPHTLPKSPSPP 447
Query: 290 PEQQPEPPIIDLASDQPSTSHTTQSEPSTIP 320
P P P + P T+ + PS P
Sbjct: 448 PPPSPLSPPPPASPSPPPTASPSAPSPSKSP 540
>TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete
Length = 923
Score = 34.3 bits (77), Expect = 0.044
Identities = 31/127 (24%), Positives = 54/127 (42%)
Frame = +1
Query: 182 PVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLGGEMQPTPTKA 241
P V+Q E QE Q ASEV + T E ++E++ +E + T T+A
Sbjct: 109 PTPVEQIETFQETT-IEQPASEVPAPEPTIEQEHPKEETTEEPKVEA-----VAETTTEA 270
Query: 242 SKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPEPPIIDL 301
PE P + V ++ +E+ P+ + T + +PE+ E PI++
Sbjct: 271 P-------------AAPETEAPAE-VETKEVTEETKPEAEKTEEPEVKPEEVKEEPIVEE 408
Query: 302 ASDQPST 308
+ +T
Sbjct: 409 TKETAAT 429
Score = 33.5 bits (75), Expect = 0.076
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 1/153 (0%)
Frame = +1
Query: 161 IKLCEKFNLPTTHPLYPDIPEPV-SVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQE 219
++ E F T ++P P +++Q P +E + P+ E V+E TT+E P +
Sbjct: 118 VEQIETFQETTIEQPASEVPAPEPTIEQEHPKEETTEEPK--VEAVAE-TTTEAPAAPE- 285
Query: 220 SSTIHNLEKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPD 279
T+A V K V E + EKT + PE+ E + +
Sbjct: 286 -------------------TEAPAEVETKEVTEETKPEAEKTEEPEVKPEEVKEEPIVEE 408
Query: 280 LQTTSDQTTEPEQQPEPPIIDLASDQPSTSHTT 312
+ T+ P ++ + +S++ + TT
Sbjct: 409 TKETAATEAAPVEE------EKSSEESKAAETT 489
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
(12%)
Length = 431
Score = 33.9 bits (76), Expect = 0.058
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Frame = +3
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATT---SEIPQQQQESSTIHNL 226
PT P P P+ +Q P P PN P T + PQQQQ S H
Sbjct: 168 PTPIPAPNPNPNPIQIQNPNPIHNPNPRPTPTPPQPRPPPTFNRAPPPQQQQPSHFSHFS 347
Query: 227 EKHLGGEMQPTPTKASKTVPRKTV 250
P+P + + P ++
Sbjct: 348 SLPPSSAPSPSPASSFNSTPSPSI 419
Score = 28.5 bits (62), Expect = 2.4
Identities = 30/128 (23%), Positives = 40/128 (30%)
Frame = +3
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKH 229
P++ P P P P Q PN TP + + P Q Q + IHN
Sbjct: 90 PSSLPQTSSSTTPPISAPPHPPQNPNPTP------IPAPNPNPNPIQIQNPNPIHN---- 239
Query: 230 LGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTE 289
+PTPT PR N+ P++ P AP S +
Sbjct: 240 --PNPRPTPTPPQ---PRPPPTFNRAPPPQQQQPSHFSHFSSLPPSSAPSPSPASSFNST 404
Query: 290 PEQQPEPP 297
P P
Sbjct: 405 PSPSIPAP 428
>TC20232
Length = 601
Score = 33.1 bits (74), Expect = 0.099
Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Frame = -2
Query: 77 SSEPVSKAPEAVHPEAQSS----GNSSKPDIYTQIQ----SLPSSPSSSSTESDDQPLSQ 128
SS+P S+ P+ P S ++S Y+ Q P SP+ S+++ + QP
Sbjct: 381 SSKPHSRVPQTTXPVVPPSTXGVAHTSSTHTYSHSQLHTSPTPQSPTCSASKQNSQP--- 211
Query: 129 HIDKLLKTKPTKLTEYGTLDYESTQIEFSKNRIKLCEKFNLPTTHPLYPDIPEPVSVQQP 188
K+ PT T L T P +HPL P P P P
Sbjct: 210 ------KSPPTNPTHQNHL*TSPTAP---------------PASHPLPPSFPNPTPP*PP 94
Query: 189 ------EPNQEPNQTPQRASEVVS 206
P++ P P S + S
Sbjct: 93 TASPLSRPHRPPPPPPPSTSSLTS 22
>TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G14_80
{Arabidopsis thaliana;}, partial (17%)
Length = 465
Score = 33.1 bits (74), Expect = 0.099
Identities = 23/71 (32%), Positives = 32/71 (44%)
Frame = +2
Query: 236 PTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPE 295
P T ++ P KT+ PE+ E T P+ + Q P ++ TEPE +PE
Sbjct: 77 PNDTTPTQENPNKTL------EPEEEAEEPTPPQSEPQSQPDP---IAAEPETEPEPEPE 229
Query: 296 PPIIDLASDQP 306
P ASD P
Sbjct: 230 P-----ASDAP 247
>TC8309 UP|O22306 (O22306) Nlj21, complete
Length = 1063
Score = 32.7 bits (73), Expect = 0.13
Identities = 35/138 (25%), Positives = 57/138 (40%), Gaps = 17/138 (12%)
Frame = +3
Query: 180 PEPVS------------VQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLE 227
PEPVS +PEP ++ +EVV E T + + + +E
Sbjct: 306 PEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTEVVEEVVTVTVTDEPK-------VE 464
Query: 228 KHLGGEMQPTPTKASKTVPRKTVLENQQTVPEK-TVPEQTVPEQDAS---EQVA-PDLQT 282
+ GE + T+ +T +E Q PE PE ++DAS E+VA P+ +
Sbjct: 465 EKTDGEAKKEATETKETKESADPVEVQ--APEAGEEPETVTLKEDASKEEEKVAEPEAKE 638
Query: 283 TSDQTTEPEQQPEPPIID 300
T P+++ E +D
Sbjct: 639 EVVNTEAPDEKKEEEKLD 692
>TC17922
Length = 470
Score = 32.3 bits (72), Expect = 0.17
Identities = 20/53 (37%), Positives = 32/53 (59%), Gaps = 2/53 (3%)
Frame = +1
Query: 71 QASGATSSEPVSKAPEAVHPEAQSSGNSS--KPDIYTQIQSLPSSPSSSSTES 121
QAS TSS P S + P +Q++ N+ P++ T+ Q+ PS PSS+++ S
Sbjct: 133 QASPPTSSPPSSPPSRSTTPTSQATANAPPYSPNVSTRHQT-PSGPSSAASTS 288
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 32.3 bits (72), Expect = 0.17
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Frame = +1
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQ------EPNQTPQRASEVVSEATTSEIPQQQQESSTI 223
P HP + P+P QP+P +P PQ + + I QQ Q
Sbjct: 70 PQHHPHFQPHPQPQLQSQPQPQHIQQSQPQPQSQPQHIQQPQPQPQLQHI-QQSQPQPQF 246
Query: 224 HNLEKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTT 283
N G P P A+ P + + + P+ P A V D +
Sbjct: 247 QNQHFQYPGTYPPPPWAATPGYP--NYQNHLSSTNALSTPQANTPYTSA---VRGDPVAS 411
Query: 284 SDQTTEPEQQPEPPII 299
S Q+ P + P +
Sbjct: 412 SGQSNPPNATGQRPFV 459
>TC17253 similar to UP|Q8SKU2 (Q8SKU2) Tic62 protein precursor, partial (9%)
Length = 793
Score = 32.0 bits (71), Expect = 0.22
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Frame = +2
Query: 207 EATTSEIPQQQQESSTIHNLEKHLGGEMQPTPTKASKTVPRKTVLE-NQQTVPEKTVPEQ 265
E+T + ST+ N++ E P+P S P + T P P
Sbjct: 263 ESTGDNVAASTTVESTVGNVD-----EKNPSPDSNSSNSPYPVYSDFKPPTSPSPNAPNT 427
Query: 266 T--------VPEQDASEQVAPDLQTTSDQTTEPEQQPEP 296
+ VPE DA+ P + +D++ + E PEP
Sbjct: 428 STSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEP 544
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 31.6 bits (70), Expect = 0.29
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 9/157 (5%)
Frame = +1
Query: 171 TTHPLY--PDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEK 228
T P Y P++P P P PN P TP + + TS+ P T
Sbjct: 94 TPSPSYSPPNVPSPPKA--PSPNNHPPYTPTPPK---TPSPTSQPPYIPLPPKT------ 240
Query: 229 HLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTT 288
P+P VP + + P T P + P T +
Sbjct: 241 -------PSPISQPPHVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPIS 399
Query: 289 EPEQQPEPPIIDLASDQ-------PSTSHTTQSEPST 318
+P P PP ++Q P++S T P+T
Sbjct: 400 QPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNT 510
Score = 28.5 bits (62), Expect = 2.4
Identities = 32/148 (21%), Positives = 49/148 (32%), Gaps = 2/148 (1%)
Frame = +1
Query: 174 PLY--PDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLG 231
P+Y P IP P P P +P TP + +P + S ++
Sbjct: 7 PVYTPPSIPTPPKT--PSPGNQPPHTPIPPKTPSPSYSPPNVPSPPKAPSPNNHPPYTPT 180
Query: 232 GEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPE 291
P+PT +P +P KT + P + P + T P
Sbjct: 181 PPKTPSPTSQPPYIP----------LPPKTPSPISQPPHVPTPPSTPSPISQPPYTPTPP 330
Query: 292 QQPEPPIIDLASDQPSTSHTTQSEPSTI 319
+ P P + QP + T + PS I
Sbjct: 331 KTPSP------TSQPPHTPTPPNTPSPI 396
>TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partial (27%)
Length = 997
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/68 (27%), Positives = 31/68 (44%)
Frame = +3
Query: 60 ATLLSQALKNKQASGATSSEPVSKAPEAVHPEAQSSGNSSKPDIYTQIQSLPSSPSSSST 119
++L S ++ + + P+SKA A P SS +SS PSS + +S
Sbjct: 513 SSLFSPSVSSSTFVSNPNPSPISKASTASGPSVSSSSSSSSSGPSPNSSGYPSSAAGTSP 692
Query: 120 ESDDQPLS 127
S +P+S
Sbjct: 693 PSPIKPIS 716
>TC8142 UP|BAD11133 (BAD11133) Glutamate-rich protein, complete
Length = 999
Score = 30.8 bits (68), Expect = 0.49
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +1
Query: 235 QPTPTKASKTVPRKTVLENQQTVPEK---TVPEQTVPEQDASEQVAPDLQTTSDQTTEPE 291
Q + ++ P V EN+ T K T+PE PEQ A+ +VA Q ++ E
Sbjct: 82 QMASVEVAQQAPTTVVQENEPTEVTKIQETIPE---PEQPAATEVAAPEQPAAEVPAPAE 252
Query: 292 QQPEPPIIDLASDQPSTSHTTQS--EPSTIPNYILESEYIDEQ 332
E P + + T T++ P T +E++ + E+
Sbjct: 253 PATEEPKEETTEEPKETETETEAPVAPETQDPLEVENKEVTEE 381
>TC13747 similar to AAL16128 (AAL16128) AT5g47540/MNJ7_13, partial (44%)
Length = 659
Score = 30.4 bits (67), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 157 SKNRIKLCEKFNLPTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQ 216
SKN+I +K P THP P P P PN + P R+ + E E Q
Sbjct: 15 SKNKINNSQKKKKPKTHPSPSPSPSP-----PSPNSTRIRNPNRSVGLEEEEEEDEGSLQ 179
Query: 217 QQESSTIHN 225
Q + + N
Sbjct: 180 AQATHSC*N 206
>TC10312 similar to UP|O49731 (O49731) Glycine-rich cell wall protein-like,
partial (20%)
Length = 592
Score = 30.4 bits (67), Expect = 0.64
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Frame = -2
Query: 72 ASGATSSEPVSKAPEAVHPEAQSSGNSS--KPDIYTQIQSLPSSPSSSS----------T 119
+SGAT S + EA + SGN+S +PD T+ S P + SSS T
Sbjct: 498 SSGATVGGNPSSSSEASRR*PRFSGNNSPGEPDTSTRPGSKPEASISSSKLLMTESRPST 319
Query: 120 ESDDQPLSQHIDKLLKTKPTKLTEYGTLDYESTQIEFSKNRIKLCEKFNLPT 171
ES LS + + +E T EST++ ++++ +F P+
Sbjct: 318 ESRSGTLSVSSSMFRMSSCSCTSESRTDSTESTRVRSDSDKLEFEFEFEFPS 163
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.124 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,477,515
Number of Sequences: 28460
Number of extensions: 89786
Number of successful extensions: 722
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of query: 461
length of database: 4,897,600
effective HSP length: 93
effective length of query: 368
effective length of database: 2,250,820
effective search space: 828301760
effective search space used: 828301760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146549.3