BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146549.11 + phase: 0
(597 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 159 1e-39
AV780221 122 1e-28
TC13572 86 9e-19
BP041113 80 7e-16
AV780705 78 5e-15
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 64 7e-11
AV428268 59 3e-09
BP060613 53 1e-07
TC18710 53 1e-07
AV414139 50 1e-06
AV412895 50 1e-06
BP056597 47 9e-06
AV418280 42 3e-04
TC12829 41 5e-04
BP085058 40 8e-04
BP033775 38 0.005
AV778285 38 0.005
AV426437 38 0.005
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro... 38 0.005
CB828232 37 0.009
>AV767121
Length = 525
Score = 159 bits (402), Expect = 1e-39
Identities = 77/185 (41%), Positives = 111/185 (59%)
Frame = +2
Query: 184 LSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDHRK 243
LS+WK + +S+GGR+ L++SVL++LP++ LSFF+ P G+ S ++ F WGGSE+ K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 244 IAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQGGR 303
IA V W +C KE GGLG++ L FN ALLGK WR L + + LW RV+ ++
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ------- 340
Query: 304 LKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTESFMVR 363
+ GS+WW +I+ + + WF + K +G G T FWS+ WLG+ R
Sbjct: 341 -PDHYSCGSSWWNDILSL---CPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLLSAR 508
Query: 364 FRRLY 368
FRRLY
Sbjct: 509 FRRLY 523
>AV780221
Length = 461
Score = 122 bits (307), Expect = 1e-28
Identities = 63/162 (38%), Positives = 96/162 (58%), Gaps = 3/162 (1%)
Frame = +3
Query: 198 LILLKSVLSSLPVYALSFFRAPAG-IISSIESILIKFFWGGSEDHRKIAWVDWNTICMNK 256
L L++SVL +LP++ L FF+ P G +++ + FF E +KIAWV W+T+C K
Sbjct: 3 LCLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPK 182
Query: 257 EAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQGGRLKEGGMTGSAWWR 316
+ GGLGV+ L FN ALLGKW WR L +R+GLW++VL +Y + + S+WW
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKNAIPQ------SASSWWN 344
Query: 317 EIIK--IQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLG 356
++ ++G GG W + + +R+G G FW++ WLG
Sbjct: 345 DLHSTCFEDG----GGGWMQRGLCRRIGEGTEVKFWNENWLG 458
>TC13572
Length = 534
Score = 85.5 bits (210), Expect(2) = 9e-19
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = -3
Query: 289 WFRVLSSRYGEQGGRLKEGGMTG-SAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNT 347
W RV+ ++YG+ GG T S+WWR++ Q G E G WFEE + K L +G +T
Sbjct: 478 WCRVVLAKYGD-------GGCTNISSWWRDV---QTAGGGENG-WFEEGVHKVLRSGNHT 332
Query: 348 FFWSDCWLGTESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAW--RWRRRLLAWEEE 405
FW + W G ++ RLY+LS K S+ E GW + W RWRR L E +
Sbjct: 331 RFWLENWTGVGILREKYYRLYNLSKLKWASIDECG--GWSQGVWNWDFRWRRPLAGRELD 158
Query: 406 LVVEIRILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQML 446
+ + + + V L D W+W+P+ Y+V + L
Sbjct: 157 WLQALSLDIVRVPLLAGVPDKWVWKPSEDGSYSVNSAFIFL 35
Score = 25.0 bits (53), Expect(2) = 9e-19
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 270 NVALLGKWCWR 280
N ALLGKW WR
Sbjct: 534 NKALLGKWLWR 502
>BP041113
Length = 503
Score = 80.5 bits (197), Expect = 7e-16
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Frame = +1
Query: 349 FWSDCWLGTESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWR--WRRRL----LAW 402
FW++ W+G + R+ RL++LS K + E GW W+ WRR L L W
Sbjct: 1 FWTEDWIGMGTLRDRYYRLFNLSKEKRCCILECG--GWNHGVWTWKLSWRRALVGRELGW 174
Query: 403 EEELVVEIRILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPW 462
E ++ + L+ V L + D WLW P G YTV Y L + D + W
Sbjct: 175 LELMMKD----LSGVCLSEGVEDKWLWLP--GGTYTVNSAYSFLQAPTLADTDPIFATIW 336
Query: 463 HKSAPLKVSIWAWRLLRNRWPTKDNLVRRGVI 494
AP V +AWR L R PT DNL++R V+
Sbjct: 337 RTVAP-SVKAFAWRCLLGRLPTYDNLIKRQVV 429
>AV780705
Length = 524
Score = 77.8 bits (190), Expect = 5e-15
Identities = 45/156 (28%), Positives = 79/156 (49%), Gaps = 3/156 (1%)
Frame = -2
Query: 145 SILSCKLGKTPFMYLGLPI--GGDARRLCFWDPVLERLRSRLSEWKSRNLSYGGRLILLK 202
++L + P YLGLP G + W + E+++ +L WK L+ G+ +L+K
Sbjct: 523 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIK 350
Query: 203 SVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGS-EDHRKIAWVDWNTICMNKEAGGL 261
+++ ++P YA++ P +S+ +++ F+W E + ++KE GG+
Sbjct: 349 AIIQAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGV 170
Query: 262 GVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRY 297
G R L N+A L + WR L + E LW RV+ S Y
Sbjct: 169 GFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLY 62
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 63.9 bits (154), Expect = 7e-11
Identities = 41/124 (33%), Positives = 68/124 (54%)
Frame = -3
Query: 85 LSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLKVNYNKSLLVGINIAESWLQEAA 144
+SHL FAD+ ++ ++ + ++L IF+++SGL N KS V I + E+ +
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSE-VFILVKETTKNQIT 197
Query: 145 SILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLRSRLSEWKSRNLSYGGRLILLKSV 204
++L K GK P LG+P + +++R S+L W R+LSY GRL L+ S+
Sbjct: 196 NMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINSI 17
Query: 205 LSSL 208
L S+
Sbjct: 16 LFSM 5
>AV428268
Length = 429
Score = 58.5 bits (140), Expect = 3e-09
Identities = 36/116 (31%), Positives = 52/116 (44%)
Frame = +3
Query: 437 YTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIWAWRLLRNRWPTKDNLVRRGVISY 496
Y+V+ Y L +D + W P +W++L NR TK NL RRGV+
Sbjct: 6 YSVKSAYDFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVI- 182
Query: 497 DTQFCVTGCGQNETIDLLIIHCPIFGALWQQIKTWIGVFFVDPHQVLDHYYQFVYS 552
+ C E+ D L+ CPI +W +I GVF V P+ H+ Q + S
Sbjct: 183 -SNVCPLCSLDEESTDHLLFSCPIV*RIWSKISE*FGVFSVFPNDSHGHFLQHLGS 347
>BP060613
Length = 378
Score = 53.1 bits (126), Expect = 1e-07
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 1/86 (1%)
Frame = +1
Query: 235 WGGSEDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLS 294
W S+ R + W W+ + K+ GGLG + N ALL K WR L + + LW ++L
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 295 SRYGEQGGRLKEGGMTGSAW-WREII 319
+ Y L+ TG++W W ++
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLL 303
>TC18710
Length = 843
Score = 53.1 bits (126), Expect = 1e-07
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +2
Query: 5 GFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLMT 64
GF T W K + VS + + +NG + QRGLRQGDP SP+LFL E L++L+
Sbjct: 638 GFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQ 817
Query: 65 SAVN 68
++ N
Sbjct: 818 NSFN 829
>AV414139
Length = 309
Score = 49.7 bits (117), Expect = 1e-06
Identities = 28/86 (32%), Positives = 39/86 (44%)
Frame = -2
Query: 393 WRWRRRLLAWEEELVVEIRILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERH 452
+RWRR L E+ ++ L V LQ D W W + D YTVR Y +L+
Sbjct: 263 FRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIYTVRSAY*LLLDPIAD 84
Query: 453 NYDVVSDAPWHKSAPLKVSIWAWRLL 478
+ V + W AP + + WRLL
Sbjct: 83 SDSEVYEKVWVGIAPSNANAFVWRLL 6
>AV412895
Length = 405
Score = 49.7 bits (117), Expect = 1e-06
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Frame = +1
Query: 436 GYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIWAWRLLRNRWPTKDNLVRRGVIS 495
G++V + L Q D V + W APL + + WR+L R T+DNL++R VI
Sbjct: 7 GFSVNSSFVFL*DQYLEEPDPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIH 186
Query: 496 YDTQFCVTGCG-QNETIDLLIIHCPIFGALWQQIKTWIGVFFVDPHQVLDHYYQFVYSSA 554
CG E+ L+ C +W + W+GV H QF
Sbjct: 187 NALDAICPLCGLAEESGSHLLFSCAESMLIWYECFAWLGVSTAQVSDPKVHLLQFSSIGR 366
Query: 555 NTTEQLLE 562
+ ++L E
Sbjct: 367 SKAQKLGE 390
>BP056597
Length = 414
Score = 47.0 bits (110), Expect = 9e-06
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +3
Query: 364 FRRLYDLSIHKDLSVGEMNILGWGENGEAW--RWRRRLLAWEEELVVEIRILLTNVTLQD 421
F L+ +S ++ + EM W EN W W+ + + + ++ ++++ +L +
Sbjct: 9 FDSLFLISNQQNCKIVEMG--HWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLIN 182
Query: 422 TESDVWLWRPNIGDG-YTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIWAWRLLRN 480
+ D W+W GDG Y+V+ Y +L + V W AP WR+ +
Sbjct: 183 GKKDTWVWILE-GDGQYSVKSAYDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVFLD 359
Query: 481 RWPTKDNLVRRGV 493
R TKDNL RR V
Sbjct: 360 RIQTKDNLSRRHV 398
>AV418280
Length = 398
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/124 (25%), Positives = 52/124 (41%)
Frame = -2
Query: 471 SIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQQIKT 530
S+ W+ L +RW + ++ QF +T +N+ + L I +LW Q +
Sbjct: 328 SMGVWQAL-HRWLGISVALPASTLANFAQFSITARNKNQRLGELAIWIATVWSLWIQRNS 152
Query: 531 WIGVFFVDPHQVLDHYYQFVYSSANTTEQLLEKVKITSLKWLKAKNVCFPFGYHLWRQRP 590
+ + LDH Y LL+ ++ S WLKAK F + + W+ P
Sbjct: 151 -----IIFRNNALDHSY------------LLDLIQSRSWHWLKAKFCGFTYSLYEWKSCP 23
Query: 591 LACL 594
L CL
Sbjct: 22 LECL 11
>TC12829
Length = 448
Score = 41.2 bits (95), Expect = 5e-04
Identities = 20/55 (36%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = +3
Query: 196 GRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFF--WGGSEDHRKIAWVD 248
GR +L+KSV ++P Y +S F P I S IE ++ KF+ W + +AW++
Sbjct: 273 GREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEYSLAWME 437
Score = 30.8 bits (68), Expect = 0.65
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 226 IESILIKFFWGGSEDHRKIAWVDWNTIC 253
+++ L+ F W G R I W+ W +C
Sbjct: 364 LKAWLVSFIWSGDVSRRSIHWLGWKKLC 447
>BP085058
Length = 452
Score = 40.4 bits (93), Expect = 8e-04
Identities = 37/133 (27%), Positives = 60/133 (44%)
Frame = +2
Query: 129 LLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLRSRLSEWK 188
L++ IN+ + + + + +GK Y+ PI + L+R+ SRL+ K
Sbjct: 62 LIININLRDRMVSITSIPFTDNIGK----YMSFPIHQGHV*KEDFVFTLDRVISRLAC*K 229
Query: 189 SRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDHRKIAWVD 248
+ L+ RL L K VLS++ +Y + P I I +++ F W E+ I V
Sbjct: 230 AYLLNKPARLTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVW---ENVNGIPLVA 400
Query: 249 WNTICMNKEAGGL 261
W TI K GL
Sbjct: 401 WETIQSRKSMVGL 439
>BP033775
Length = 530
Score = 37.7 bits (86), Expect = 0.005
Identities = 21/78 (26%), Positives = 38/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 523 ALWQQIKTWIG-VFFVDPHQVLDHYYQFVYSSANT--TEQLLEKVKITSLKWLKAKNVCF 579
ALW ++ +G ++ V + + V + T +E +++ +K + KWL+ K F
Sbjct: 469 ALWYKV*ARVGGLYGVQEYGQFGTHRNDVLFNGKTINSEAVVDLIKFKAWKWLQCKTKDF 290
Query: 580 PFGYHLWRQRPLACLGIG 597
+ + W P CLGIG
Sbjct: 289 SYSSYAWNWNPCICLGIG 236
>AV778285
Length = 519
Score = 37.7 bits (86), Expect = 0.005
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 556 TTEQLLEKVKITSLKWLKAKNVCFPFGYHLWRQRPLACLG 595
++E+++E VK S KWLK K F ++ W P CLG
Sbjct: 494 SSEKVVELVKFRSWKWLKCKQNHFKASFYEWETNPSVCLG 375
>AV426437
Length = 303
Score = 37.7 bits (86), Expect = 0.005
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = +1
Query: 239 EDHRKIAWVDWNTICMNKEAGGLGVR 264
E+ RKIAW++W TIC K GLGV+
Sbjct: 214 ENQRKIAWINWETICKPKWLRGLGVK 291
>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
partial (10%)
Length = 879
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 5/85 (5%)
Frame = -1
Query: 383 ILGWGENGEA-WRW----RRRLLAWEEELVVEIRILLTNVTLQDTESDVWLWRPNIGDGY 437
IL G+ E W W RR E LV ++ LL +V L + +D W W N Y
Sbjct: 801 ILNLGKRVEGVWTWSFIRRRNPSTRENLLVADLCNLLESVPLSEDTNDSWSWTANPEGQY 622
Query: 438 TVRGVYQMLMRQERHNYDVVSDAPW 462
TV+ Y+ L D + W
Sbjct: 621 TVQTAYKFLRASSNEFTDPIFHFVW 547
>CB828232
Length = 532
Score = 37.0 bits (84), Expect = 0.009
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 187 WKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWG 236
WK+ LS G R+ K VLSSLP++ LSFF+ + + I +F WG
Sbjct: 388 WKTLCLS-GARVCCFKMVLSSLPLFFLSFFKIKC-VAKVCKQIQSRFLWG 531
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,663,945
Number of Sequences: 28460
Number of extensions: 224979
Number of successful extensions: 1843
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of query: 597
length of database: 4,897,600
effective HSP length: 95
effective length of query: 502
effective length of database: 2,193,900
effective search space: 1101337800
effective search space used: 1101337800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146549.11