BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146548.14 - phase: 0
(180 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB827630 151 6e-38
TC12233 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transpor... 115 3e-27
TC10865 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transpor... 108 7e-25
TC19153 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transpor... 89 3e-19
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 47 2e-06
AV416268 39 4e-04
BG662257 39 5e-04
TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog,... 37 0.002
BP057421 34 0.013
BP055095 31 0.11
AV771159 30 0.19
TC9971 homologue to UP|Q9LT08 (Q9LT08) 26S proteasome, non-ATPas... 27 2.1
TC13663 similar to PIR|T05098|T05098 transcription factor IID 30... 25 6.0
TC19910 similar to PIR|T05098|T05098 transcription factor IID 30... 25 6.0
TC20063 25 7.8
>CB827630
Length = 405
Score = 151 bits (382), Expect = 6e-38
Identities = 75/85 (88%), Positives = 80/85 (93%)
Frame = +2
Query: 1 MKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADA 60
MKRRL VAISLIGDP+VVYMDEPSTGLDPASRK LWNV+KLAK+DRAIILTTHSMEEA+A
Sbjct: 149 MKRRLIVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVKLAKRDRAIILTTHSMEEAEA 328
Query: 61 LCDRLGIFVDGSLQCVGYPKELKGR 85
LCDRLGI V+GSLQCVG KELKGR
Sbjct: 329 LCDRLGIXVNGSLQCVGNAKELKGR 403
>TC12233 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transporter,
partial (9%)
Length = 581
Score = 115 bits (289), Expect = 3e-27
Identities = 56/79 (70%), Positives = 68/79 (85%), Gaps = 1/79 (1%)
Frame = +2
Query: 81 ELKGRYGGTYVFAMTTSSDHEKDVENMVQRLTPNANKIYHLSGTQKFELPKEEIKMANVF 140
+LK RYGGTYVF MTTSSDHE++VE++V +LTPNANKIYHLSGTQKFELPKEE ++A+VF
Sbjct: 35 QLKXRYGGTYVFTMTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEFRIADVF 214
Query: 141 RAIEAAKRNFT-VFAWGLS 158
RA + KR + V AWGL+
Sbjct: 215 RAGGSCKRRTSLVSAWGLA 271
Score = 46.2 bits (108), Expect = 3e-06
Identities = 25/35 (71%), Positives = 28/35 (79%), Gaps = 1/35 (2%)
Frame = +1
Query: 147 KRNFTVFAWGLSDTT-LEDVFIKVAREAQAFDTLT 180
K+NFT F G S T +EDVFIKVAREAQAFDTL+
Sbjct: 235 KKNFTGFCMGFSWTPHVEDVFIKVAREAQAFDTLS 339
>TC10865 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transporter,
partial (7%)
Length = 553
Score = 108 bits (269), Expect = 7e-25
Identities = 49/67 (73%), Positives = 62/67 (92%)
Frame = +1
Query: 114 NANKIYHLSGTQKFELPKEEIKMANVFRAIEAAKRNFTVFAWGLSDTTLEDVFIKVAREA 173
NAN+IYH+SGTQKFELPK+++++ +VF+A+E AKRNFTV AWGL+DTTLEDVFIKVAR A
Sbjct: 1 NANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKVARGA 180
Query: 174 QAFDTLT 180
+AFD L+
Sbjct: 181 KAFDILS 201
>TC19153 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transporter,
partial (8%)
Length = 576
Score = 89.4 bits (220), Expect = 3e-19
Identities = 39/62 (62%), Positives = 51/62 (81%)
Frame = +1
Query: 97 SSDHEKDVENMVQRLTPNANKIYHLSGTQKFELPKEEIKMANVFRAIEAAKRNFTVFAWG 156
S DHEKDVEN+VQ+L+PNANKIYH+SGTQKFELPK+++++ +VFRA+E A+ F G
Sbjct: 1 SVDHEKDVENLVQKLSPNANKIYHISGTQKFELPKDDVRIGSVFRAVETAQEKLHSFCMG 180
Query: 157 LS 158
S
Sbjct: 181 FS 186
Score = 57.4 bits (137), Expect = 1e-09
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +2
Query: 147 KRNFTVFAWGLSDTTLEDVFIKVAREAQAFD 177
KRNFTV AWGL+DTTLEDVFIKVAR A+AFD
Sbjct: 152 KRNFTVSAWGLADTTLEDVFIKVARGAKAFD 244
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 47.0 bits (110), Expect = 2e-06
Identities = 22/63 (34%), Positives = 40/63 (62%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADAL 61
KRRL++AI L+ P ++ +DEP GLD +R + ++K K++ +++ +H + E +L
Sbjct: 84 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFASL 263
Query: 62 CDR 64
DR
Sbjct: 264 VDR 272
>AV416268
Length = 424
Score = 39.3 bits (90), Expect = 4e-04
Identities = 20/56 (35%), Positives = 36/56 (63%), Gaps = 4/56 (7%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLD-PASRKCLWNVIKLAKQD---RAIILTTH 53
KRR+S+ I ++ P+++++DEP++GLD AS + + L K+D R I+ + H
Sbjct: 183 KRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVISRISSLNKKDGIQRTIVASIH 350
>BG662257
Length = 336
Score = 38.9 bits (89), Expect = 5e-04
Identities = 15/54 (27%), Positives = 33/54 (60%)
Frame = +1
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSM 55
K+R+++A +++ PK++ +DE ++ LD S K + + + + DR I+ H +
Sbjct: 154 KQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRL 315
>TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog, partial
(50%)
Length = 968
Score = 37.4 bits (85), Expect = 0.002
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEADAL 61
+ R+++A +L +P ++ +DEP+ LD + C+W L DR +++ +HS + + +
Sbjct: 747 RMRIALARALFINPTILLLDEPTNHLDLEA--CVWLEESLKNFDRIMVVISHSQDFLNGV 920
Query: 62 CDRL 65
C +
Sbjct: 921 CTNI 932
>BP057421
Length = 547
Score = 34.3 bits (77), Expect = 0.013
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPASR----KCLWNVIKLAK 43
K+R++ ++G K ++MDE STGLD ++ KCL ++ L +
Sbjct: 408 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTE 545
>BP055095
Length = 538
Score = 31.2 bits (69), Expect = 0.11
Identities = 13/30 (43%), Positives = 21/30 (69%)
Frame = +3
Query: 2 KRRLSVAISLIGDPKVVYMDEPSTGLDPAS 31
K+R++ L+G K ++MDE STGLD ++
Sbjct: 117 KKRVTTGEMLVGPAKALFMDEISTGLDSST 206
>AV771159
Length = 486
Score = 30.4 bits (67), Expect = 0.19
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 11 LIGDPKVVYMDEPSTGLDPASRKCLWNVI-KLAKQDRAIILTTH 53
L+ P ++ +DEP++GLD + + N I +LA R ++ T H
Sbjct: 340 LLIHPSLLLLDEPTSGLDSTTALRILNTIPRLATGGRTVVTTIH 209
>TC9971 homologue to UP|Q9LT08 (Q9LT08) 26S proteasome, non-ATPase
regulatory subunit, partial (60%)
Length = 765
Score = 26.9 bits (58), Expect = 2.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 100 HEKDVENMVQRLTPNANKIYHLSGTQKFELPKEEIKMANVFR 141
H K E VQ + A K Y+ + ++ ELP E++ +ANV R
Sbjct: 342 HSKTNEQTVQEMLSLATK-YNKAVQEEDELPPEKLAIANVGR 464
>TC13663 similar to PIR|T05098|T05098 transcription factor IID 30K chain
homolog F28M20.90 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (69%)
Length = 541
Score = 25.4 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 19 YMDEPSTGLDPASR 32
+ D PSTG+DPA+R
Sbjct: 238 FADSPSTGVDPATR 279
>TC19910 similar to PIR|T05098|T05098 transcription factor IID 30K chain
homolog F28M20.90 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (34%)
Length = 490
Score = 25.4 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 19 YMDEPSTGLDPASR 32
+ D PSTG+DPA+R
Sbjct: 91 FADSPSTGVDPATR 132
>TC20063
Length = 483
Score = 25.0 bits (53), Expect = 7.8
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -1
Query: 95 TTSSDHEKDVENMVQRLTPNANKIYHLS 122
T+S DH + N Q+L IYHLS
Sbjct: 456 TSSVDHPSRLVNWEQKLASIQKAIYHLS 373
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,416,226
Number of Sequences: 28460
Number of extensions: 26247
Number of successful extensions: 132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146548.14