TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146527.10 - phase: 0 /pseudo
         (129 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP060613                                                               39  3e-04
AV780392                                                               33  0.012
AV768548                                                               28  0.65
TC18986                                                                27  1.1
AW719889                                                               26  1.9
TC9176                                                                 26  2.5
AV409959                                                               26  2.5
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso...    26  2.5
TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F...    26  2.5
TC17335 similar to UP|Q9M2C0 (Q9M2C0) Nodulin-like protein, part...    25  3.2
TC15106 homologue to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (4%)        25  3.2
TC20031                                                                25  4.2
BP034926                                                               25  4.2
TC18652                                                                25  5.5
TC11672 similar to UP|Q9NGW5 (Q9NGW5) Brakeless protein, partial...    25  5.5
TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alph...    25  5.5
TC8433                                                                 25  5.5
TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%)         25  5.5
TC9926 similar to GB|CAD40682.1|21741506|OSJN00124 OSJNBb0118P14...    25  5.5
TC14042 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alph...    25  5.5

>BP060613 
          Length = 378

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS 59
           ++ + + LWV +L   Y   H+ L  +  + +S  WSS++  + +L +   W++GSG +
Sbjct: 184 ILHNPDALWVQILKALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGET 360


>AV780392 
          Length = 534

 Score = 33.5 bits (75), Expect = 0.012
 Identities = 11/30 (36%), Positives = 22/30 (72%)
 Frame = -3

Query: 37  SSIIRAKNILKEGYTWRIGSGSSSFWFSNW 66
           S +  A N +++G+++R+  G++S W+SNW
Sbjct: 415 SRLTFASNFVRDGFSFRLQPGNTSRWYSNW 326


>AV768548 
          Length = 254

 Score = 27.7 bits (60), Expect = 0.65
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
 Frame = -2

Query: 61  FWFSN----WNSLGPIGSY----VPIIDIHDLHLSVRD 90
           FW  +    WNSLG + ++    +P ID+H LHL + D
Sbjct: 226 FWSEDFAYIWNSLGFLCAFSQWLLPTIDVHYLHLILDD 113


>TC18986 
          Length = 678

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 17 YTGGHNTLLASASSNSSPTWSSIIRA-KNILKEGYTWRIGSGSSSFWFSN 65
          + G H ++    S    P   S+  A K +  +G T     GSS FW SN
Sbjct: 21 FCGVHRSIGCLGSCTKPPVIGSMDEASKGLRNQGQTVTKDDGSSDFWSSN 170


>AW719889 
          Length = 623

 Score = 26.2 bits (56), Expect = 1.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 47  KEGYTWRIGSGSSSFWFSNWNSLGPIGSYVPIIDIHD 83
           + G  W+       FWF +WN+L P+   + +    D
Sbjct: 157 ENGVCWKF---LGDFWFCHWNTLWPLAGVLSLCLFRD 258


>TC9176 
          Length = 671

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 2   VQSTNKLWVSLL-SNKYTGGHNTLLASASSNSSPT--WSSIIRAKNILKEGYTWRI 54
           V++T K+ ++L  S +Y      + A  S  ++ T  WS  I + N+++   TWR+
Sbjct: 443 VKATLKITMALTRSGRYCERDQAVRAPQSWPTTKTFSWSGAITSSNLMRSPTTWRL 276


>AV409959 
          Length = 424

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (49%)
 Frame = +2

Query: 33  SPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHLSV 88
           SP W+++ R  N+    +T    S +SS W   W  L  +G+Y     + DL +S+
Sbjct: 164 SPQWATM-RLSNLTLIQFTKLNISHTSSLWAEWWGRLYSMGNYWMFTSL-DLSISI 325


>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor  (Atperox
           P31) (ATP41) , partial (38%)
          Length = 475

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 98  HTQVLYTNLPSAVENHINNIHIQFN 122
           HT++L T++P+ + NH  + H Q N
Sbjct: 110 HTRLLQTHVPTILPNHPRHRHQQTN 184


>TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
           partial (75%)
          Length = 985

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 27/92 (29%), Positives = 38/92 (40%), Gaps = 8/92 (8%)
 Frame = -3

Query: 10  VSLLSNKYTGGHNTLLASASSNSSP-------TWSSIIRAKNILKE-GYTWRIGSGSSSF 61
           +SLL+N    G +   A       P       T   +IRA+++ K  G     G+G    
Sbjct: 446 LSLLTNNVENGIDEFSAFGVMTFRPIVTGAGLTEDEVIRAEDLAKRTGSDGVHGAGLQIH 267

Query: 62  WFSNWNSLGPIGSYVPIIDIHDLHLSVRDVLS 93
             S WN     G  V  ID  +L LS+  VL+
Sbjct: 266 EDSAWNVPSTGGFVVVDIDAFELKLSIAVVLA 171


>TC17335 similar to UP|Q9M2C0 (Q9M2C0) Nodulin-like protein, partial (85%)
          Length = 911

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 10/28 (35%), Positives = 14/28 (49%), Gaps = 5/28 (17%)
 Frame = +2

Query: 45  ILKEGYTWRIGSGSSSFWFS-----NWN 67
           IL EG+ WR+      FW +     +WN
Sbjct: 599 ILFEGFVWRVAGHGGYFWINQTCG*SWN 682


>TC15106 homologue to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (4%)
          Length = 538

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 52  WRIGSGSSSFWFSNWN 67
           W+ G G   FW S+WN
Sbjct: 167 WKTGYGIHGFWPSSWN 214


>TC20031 
          Length = 534

 Score = 25.0 bits (53), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 72  IGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLP 107
           IG+Y   I   D  L++R  +S+  NH + L   +P
Sbjct: 368 IGNYRSFIAAADALLAIRQEVSSIDNHLESLINEIP 475


>BP034926 
          Length = 607

 Score = 25.0 bits (53), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 74  SYVPIIDIHDLHLSVRDVLSAPGN 97
           S+VPI+ I++  L +   LS+P N
Sbjct: 594 SFVPILTINNAFLMMNSALSSPNN 523


>TC18652 
          Length = 527

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 2   VQSTNKLWVSLLSNKYTGGHNTL 24
           ++STN +W + +S K    +NTL
Sbjct: 362 LESTNDIWTAFISKKLI*SNNTL 294


>TC11672 similar to UP|Q9NGW5 (Q9NGW5) Brakeless protein, partial (3%)
          Length = 555

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 14 SNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS 58
          SNK +  H +L  SASS+SS + +S + + +     Y  + G GS
Sbjct: 30 SNKVSTPHPSLSKSASSSSSTSSASSVSSSS----SYCSQTGGGS 152


>TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, complete
          Length = 1897

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 67   NSLGPIGS-YVPIIDIHDLHLSVR 89
            N  G IG+ Y P++D H  H++V+
Sbjct: 1114 NHPGQIGNGYAPVLDCHTSHIAVK 1185


>TC8433 
          Length = 627

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 52  WRIG-SGSSSFWFSNWNSLGPI 72
           WR   SG S FW++ WN+  P+
Sbjct: 560 WRYPFSGVSIFWYNEWNAE*PL 625


>TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%)
          Length = 1844

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 67   NSLGPIGS-YVPIIDIHDLHLSVR 89
            N  G IG+ Y P++D H  H++V+
Sbjct: 1095 NHPGQIGNGYAPVLDCHTSHIAVK 1166


>TC9926 similar to GB|CAD40682.1|21741506|OSJN00124 OSJNBb0118P14.20 {Oryza
           sativa (japonica cultivar-group);} , partial (36%)
          Length = 925

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 3   QSTNKLWVSLLSNKYTGG 20
           QS  KLW S L +K TGG
Sbjct: 738 QS*GKLWTSFLVDKKTGG 791


>TC14042 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alpha 1,
           partial (38%)
          Length = 800

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 67  NSLGPIGS-YVPIIDIHDLHLSVR 89
           N  G IG+ Y P++D H  H++V+
Sbjct: 182 NHPGQIGNGYAPVLDCHTSHIAVK 253


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,884,150
Number of Sequences: 28460
Number of extensions: 43530
Number of successful extensions: 226
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of query: 129
length of database: 4,897,600
effective HSP length: 80
effective length of query: 49
effective length of database: 2,620,800
effective search space: 128419200
effective search space used: 128419200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)