TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146527.1 - phase: 0 
         (468 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14906 similar to UP|Q84WK5 (Q84WK5) At1g61150, partial (93%)         65  2e-11
AV418224                                                               30  1.1
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote...    30  1.1
BP034538                                                               28  3.2
NP459568 NADH dehydrogenase ND5 [Lotus japonicus]                      28  3.2
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep...    28  4.2
AV771032                                                               27  9.3

>TC14906 similar to UP|Q84WK5 (Q84WK5) At1g61150, partial (93%)
          Length = 1175

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 2/195 (1%)
 Frame = +2

Query: 232 RMKQQIKIEEVPVSPNASYGIVRSYLLHYGYEDTLNSFDEASRSTIPPINIVQENGIDDQ 291
           R + + K+ +V +       +V ++L+  GY +    F + S  T P I++         
Sbjct: 218 REEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRKES-GTEPDIDLA-------- 370

Query: 292 ETTYALNHRKTLRQLIRDGEIDAAFGKLREWYPQIAEDNTSAMCFLLHCQKFIELVRVGA 351
                +  R  +++ ++ G ++ A  K+ +  P+I + N   + F L  Q+ IEL+R G 
Sbjct: 371 ----TITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQ-LFFHLQQQRLIELIRNGK 535

Query: 352 LEEAVKYGRIELS--SFFGLSLFEDIVQDCVALLAYERPLESAVGYLLKDSQREVVADAV 409
           +EEA+ + + EL+       S  E++ +  VALLA+E      VG LL  SQR   A  V
Sbjct: 536 VEEALDFAQEELAPRGEENHSFLEEL-ERTVALLAFEDVSNCPVGELLDISQRLKTASEV 712

Query: 410 NAMILSTNPNIKVTK 424
           NA IL++  + K  K
Sbjct: 713 NAAILTSQSHEKDPK 757


>AV418224 
          Length = 426

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 32/138 (23%), Positives = 54/138 (38%)
 Frame = +1

Query: 252 IVRSYLLHYGYEDTLNSFDEASRSTIPPINIVQENGIDDQETTYALNHRKTLRQLIRDGE 311
           I+  Y+L   Y DT     E              N + D          K +   +++ +
Sbjct: 4   ILVDYMLRMSYYDTAQKLAEC-------------NNLQDLVDIDVFQEAKKVIDALQNKD 144

Query: 312 IDAAFGKLREWYPQIAEDNTSAMCFLLHCQKFIELVRVGALEEAVKYGRIELSSFFGLSL 371
           +  A     +  P++ +   S + F L  Q+FIELVR      A+ Y R  L+ +    +
Sbjct: 145 VAPALAWCADNKPRLKKSK-SKLEFQLRLQEFIELVRAENNLRAIAYARKYLAPWGATHM 321

Query: 372 FEDIVQDCVALLAYERPL 389
            E  +Q  +A LA+   L
Sbjct: 322 KE--LQRVLATLAFREIL 369


>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
           chloroplast precursor (CP29A), partial (63%)
          Length = 1602

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +3

Query: 120 FTTESFKMRRQPGWEANSCGYHGDDGFLYRGQGKGEAFGPTYTTGDIVGAGINYAAQEFF 179
           F   SF       +   S GY G     YRG G           G++   G++ AA E  
Sbjct: 621 FRNNSFNRGGSDSYRGGSDGYRGGGSDGYRGGGSSSYSENRVHVGNLAW-GVDNAALESL 797

Query: 180 FTKNGQVV 187
           F + G+VV
Sbjct: 798 FREQGRVV 821


>BP034538 
          Length = 392

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 20/58 (34%), Positives = 28/58 (47%)
 Frame = -3

Query: 3   ETNGKNTIEKPDQDQNQDLGFHFLELSRRKAKLDSEDFEVDDEEKEESPSELNTINSS 60
           E  G    E   ++  +D    F E SRR+ + D E  E D+E    +P  L TI+SS
Sbjct: 312 EDLGGEDTENGREEAEEDGSAGFEEDSRRQTESDGESVEGDEERNCPTPISL-TIHSS 142


>NP459568 NADH dehydrogenase ND5 [Lotus japonicus]
          Length = 2244

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 11/41 (26%), Positives = 23/41 (55%)
 Frame = -1

Query: 117 SIGFTTESFKMRRQPGWEANSCGYHGDDGFLYRGQGKGEAF 157
           S+ +    ++  ++  ++ NSC YHG  G +Y+ + +G  F
Sbjct: 879 SVHYRRYGYEKGKKSSYKENSCCYHG--GSMYKSRNRGGTF 763


>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
           containing protein homolog-like {Oryza sativa (japonica
           cultivar-group);} , partial (49%)
          Length = 1586

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 414 LSTNPNIKVTK-NCLHSNLERLLRQLTACCLERRSLSGEQGEAFQLQRVLSSGKR 467
           LS   N  VT  +C+H +L +  + L AC   RRS S  +     L RV SS +R
Sbjct: 448 LSDRFNSAVTACSCVHGSLLQAEKSLKACERSRRSSSANEDL*DLLLRVASSPRR 284


>AV771032 
          Length = 479

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 18/51 (35%), Positives = 24/51 (46%)
 Frame = +1

Query: 305 QLIRDGEIDAAFGKLREWYPQIAEDNTSAMCFLLHCQKFIELVRVGALEEA 355
           Q I + E  A + KLR+W PQ AE   +     L  + F  +V V  L  A
Sbjct: 175 QDIWEAEGYAYYSKLRKWLPQHAESFMTIR*SSLQFKFFYPVVNVARLHSA 327


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,677,004
Number of Sequences: 28460
Number of extensions: 77828
Number of successful extensions: 368
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of query: 468
length of database: 4,897,600
effective HSP length: 94
effective length of query: 374
effective length of database: 2,222,360
effective search space: 831162640
effective search space used: 831162640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)