TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146343.6 + phase: 0 /pseudo
         (560 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               49  3e-06
BP084332                                                               39  0.003
AV406454                                                               27  6.7

>BP066094 
          Length = 532

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 43/116 (37%), Positives = 56/116 (48%)
 Frame = +3

Query: 159 FFKWM*KVHF*MVF*MRKFM*ANLLTS*MKKNQIMFLNSLKHFMVLNKLPELGMIDLSHF 218
           F + M +V F*MV   RK M  N     M++   +F N     MV +KLPE GM D +H 
Sbjct: 144 FIR*MLRVPF*MVTSQRKSMFINPQVXKMRRTLTIFSN*RNLSMV*SKLPEHGMRDSAHS 323

Query: 219 *LKMDFQEEK*IPHFSEKLITLTYS*FKFMWMISFLVQPKRKWMKIFPISCKMNLR 274
             KM     K*I     KL  + Y   KFM MI +L      + K F   C++NL+
Sbjct: 324 FWKMSX*GVK*IQLSFAKLTKMIY*LCKFMLMILYLDLLIHLYAKSFLR*CRLNLK 491


>BP084332 
          Length = 368

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/112 (32%), Positives = 55/112 (48%)
 Frame = +1

Query: 441 AKHHCTLNNLS*SVCICSKLLLSSFMDQKSVGRLLAKVHKCSYFV**YKCN*FFKKSYST 500
           A +HCT+      + + S +  S  +D+ S G L     +    +**+ CN    +SY T
Sbjct: 31  AINHCTIYCRG-RIYLSSNMQHSDALDETSAGGLSNP*EQYPNLL**HCCNFIE*ESYLT 207

Query: 501 F*V*AY*YKSSFH*RPCSEKGYYIKLC*YRKSTS*HFHKTFS***IQFYQRK 552
           F   A+* K S +*R C+E     ++C*Y  S   + +K  S  *I F+  K
Sbjct: 208 FKGKAH*GKVSLY*RLCTEGRTSSEVC*Y*PSMGRYLYKALSRG*I*FHSEK 363


>AV406454 
          Length = 430

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 19/29 (64%)
 Frame = -3

Query: 187 MKKNQIMFLNSLKHFMVLNKLPELGMIDL 215
           MK+N +  LNSL+ F ++ + P L  IDL
Sbjct: 380 MKQNLLQGLNSLRGFHIVERHPSLMHIDL 294


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.379    0.169    0.641 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,167,974
Number of Sequences: 28460
Number of extensions: 124747
Number of successful extensions: 1877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 872
length of query: 560
length of database: 4,897,600
effective HSP length: 95
effective length of query: 465
effective length of database: 2,193,900
effective search space: 1020163500
effective search space used: 1020163500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.7 bits)
S2: 58 (26.9 bits)