TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146343.4 - phase: 0 
         (141 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP031377                                                               85  5e-18
BP033315                                                               56  2e-09
AV769827                                                               35  0.005
AW428780                                                               33  0.014
TC9487 homologue to UP|BAC99050 (BAC99050) Brassinosteroid recep...    25  3.9
AV409767                                                               25  3.9
TC10362 similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-l...    25  3.9
TC11810                                                                25  6.6
AW719682                                                               25  6.6
AV422346                                                               24  8.6

>BP031377 
          Length = 401

 Score = 84.7 bits (208), Expect = 5e-18
 Identities = 41/52 (78%), Positives = 44/52 (83%)
 Frame = -3

Query: 84  DFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTNTKASILVVQQQ 135
           DFIIVGRRNG+KS  T  L +WTEY ELGV+GDLLASPD  TKASILVVQQQ
Sbjct: 390 DFIIVGRRNGVKSEMTAGLENWTEYTELGVIGDLLASPDMETKASILVVQQQ 235


>BP033315 
          Length = 433

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
 Frame = -1

Query: 84  DFIIVGRRNGIKSPQTQALA-----SWTEYPELGVLGDLLASPDTNTKASILVVQQQ 135
           D ++VGR +    PQT ++       W+E PELG +GD+LASPD  TKASILVVQQQ
Sbjct: 352 DLVMVGREH----PQTPSVLLKGHEKWSECPELGTIGDMLASPDFVTKASILVVQQQ 194


>AV769827 
          Length = 438

 Score = 35.0 bits (79), Expect = 0.005
 Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 1/53 (1%)
 Frame = -2

Query: 83  HDFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTN-TKASILVVQQ 134
           +D IIVG+     +   +      EY ELG +GD+LAS   +  ++S+LV+QQ
Sbjct: 374 YDLIIVGKGRFPSTMVAELAERHAEYAELGPVGDILASSTGHKMRSSVLVIQQ 216


>AW428780 
          Length = 330

 Score = 33.5 bits (75), Expect = 0.014
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 82  QHDFIIVGRRNGI--KSPQTQALASWTEYPELGVLGDLLASPDTNTKASILVVQ 133
           +++FIIVG+   I   +       S  E+ ELG +GDLL S      +S+LV+Q
Sbjct: 86  EYEFIIVGKGQQILESTMMLNIQDSRLEHAELGPVGDLLTSSGQGITSSVLVIQ 247


>TC9487 homologue to UP|BAC99050 (BAC99050) Brassinosteroid receptor,
           partial (8%)
          Length = 744

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = -2

Query: 86  IIVGRRNGIKSPQTQA 101
           IIVGRR+G+ S Q QA
Sbjct: 140 IIVGRRHGLSSKQAQA 93


>AV409767 
          Length = 411

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
 Frame = -2

Query: 15  KILITWVVYHLVSTIKN-DEFTSWDVMLD 42
           KI    +VYHL+  I+N  EFTS  + +D
Sbjct: 335 KIRQNTIVYHLIMQIRNLTEFTSKTISID 249


>TC10362 similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-like protein
           (At5g07010), partial (23%)
          Length = 425

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (57%)
 Frame = -3

Query: 5   HCVWLKGQSKKILITWVVYHLVST 28
           HC WL   S+K L  W+ + LV T
Sbjct: 237 HCAWLGSASEKCL--WLGFQLVGT 172


>TC11810 
          Length = 640

 Score = 24.6 bits (52), Expect = 6.6
 Identities = 23/85 (27%), Positives = 34/85 (39%), Gaps = 16/85 (18%)
 Frame = +1

Query: 16  ILITWVVYHLVSTIKNDEFTSWDVMLDDEL--------------LKGVKGVYGSVDNVTY 61
           +L  W+V   V +   D+   + V LDDE               LKG      ++D V  
Sbjct: 136 LLSDWIVDANVQSFDGDKNYPFGVELDDEYETDSIDYDDGAARPLKGSSLELETMDGVAV 315

Query: 62  EKVEVE--NTSDTTEFISDIAIQHD 84
              +VE  N  D ++  SD+   HD
Sbjct: 316 GSPDVEHANIDDASDDESDLNYFHD 390


>AW719682 
          Length = 480

 Score = 24.6 bits (52), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 30  KNDEFTSWDVMLDDELLKGVKGVYGSVDNVTYEKV 64
           ++ EF S  + +DD+L KG+KGV       T +KV
Sbjct: 208 RSPEFIS--LFVDDKLRKGLKGVSEDDIETTLDKV 306


>AV422346 
          Length = 465

 Score = 24.3 bits (51), Expect = 8.6
 Identities = 6/18 (33%), Positives = 11/18 (60%)
 Frame = +3

Query: 6   CVWLKGQSKKILITWVVY 23
           C+WL+   K  ++ W +Y
Sbjct: 153 CLWLESMRKHTILAWTLY 206


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,291,683
Number of Sequences: 28460
Number of extensions: 23592
Number of successful extensions: 145
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of query: 141
length of database: 4,897,600
effective HSP length: 81
effective length of query: 60
effective length of database: 2,592,340
effective search space: 155540400
effective search space used: 155540400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)