TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146343.3 - phase: 0 
         (670 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP031377                                                               85  4e-17
BP033315                                                               56  2e-08
AW163886                                                               40  0.001
AV769827                                                               35  0.039
AW428780                                                               33  0.11
TC17458 similar to UP|Q93X17 (Q93X17) Snakin2 precursor, partial...    31  0.56
AV409534                                                               30  1.3
BI418201                                                               28  6.2
TC8079 homologue to UP|Q9M6S1 (Q9M6S1) MAP kinase 3, complete          27  8.2

>BP031377 
          Length = 401

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 41/52 (78%), Positives = 44/52 (83%)
 Frame = -3

Query: 613 DFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTNTKASILVVQQQ 664
           DFIIVGRRNG+KS  T  L +WTEY ELGV+GDLLASPD  TKASILVVQQQ
Sbjct: 390 DFIIVGRRNGVKSEMTAGLENWTEYTELGVIGDLLASPDMETKASILVVQQQ 235


>BP033315 
          Length = 433

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
 Frame = -1

Query: 613 DFIIVGRRNGIKSPQTQALA-----SWTEYPELGVLGDLLASPDTNTKASILVVQQQ 664
           D ++VGR +    PQT ++       W+E PELG +GD+LASPD  TKASILVVQQQ
Sbjct: 352 DLVMVGREH----PQTPSVLLKGHEKWSECPELGTIGDMLASPDFVTKASILVVQQQ 194


>AW163886 
          Length = 177

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/55 (36%), Positives = 36/55 (65%)
 Frame = +1

Query: 349 SELKIVSCILKPSHIIPIKNVLDICSPTSSNPLVIHILHLLELVGRSSPVFISHR 403
           S+L++++CI  PS+I  I  +++    TS++ L + I+HL+EL  RSS + +  R
Sbjct: 13  SQLRVMACIHGPSNIPSIIGLIESTCGTSNSLLKLFIMHLVELTERSSSIMMVQR 177


>AV769827 
          Length = 438

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 1/53 (1%)
 Frame = -2

Query: 612 HDFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTN-TKASILVVQQ 663
           +D IIVG+     +   +      EY ELG +GD+LAS   +  ++S+LV+QQ
Sbjct: 374 YDLIIVGKGRFPSTMVAELAERHAEYAELGPVGDILASSTGHKMRSSVLVIQQ 216


>AW428780 
          Length = 330

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 611 QHDFIIVGRRNGI--KSPQTQALASWTEYPELGVLGDLLASPDTNTKASILVVQ 662
           +++FIIVG+   I   +       S  E+ ELG +GDLL S      +S+LV+Q
Sbjct: 86  EYEFIIVGKGQQILESTMMLNIQDSRLEHAELGPVGDLLTSSGQGITSSVLVIQ 247


>TC17458 similar to UP|Q93X17 (Q93X17) Snakin2 precursor, partial (55%)
          Length = 309

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 511 PFNHNENSKQIAMIFLGGSDDREALCLAKRTIKEDTYHLVVYHLVST 557
           PF+H+ +S  ++M+ +     R  +  +K  +KE     VVYHLV T
Sbjct: 63  PFSHHFSSSILSMLLINRDTHRRWVL*SK*IVKEHVVLGVVYHLVQT 203


>AV409534 
          Length = 427

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 324 VKYLYDPSRKYAGYQKRNILSLKPNSELKIVSCILKPSHIIPIKN 368
           VKYL+ P+R   G  K +I  +   S    V CI + + I PIKN
Sbjct: 241 VKYLWSPNRATHGLTKISIFEIC*TSTQ*QVICISRGTIIAPIKN 107


>BI418201 
          Length = 637

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 238 KSDYIYVWLGIIVAVHLFKMLVTIGICW 265
           ++  +  W+G++VA  L   LV + +CW
Sbjct: 247 RTHVVRAWIGLLVAFILLLRLVHLSLCW 164


>TC8079 homologue to UP|Q9M6S1 (Q9M6S1) MAP kinase 3, complete
          Length = 1550

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 15/57 (26%), Positives = 28/57 (48%)
 Frame = -1

Query: 190  ICIVGLIVPEGPPLGTEMIKQLELFCSWFLFPIFVTSCAMKIDLSVYVKSDYIYVWL 246
            +C++G I      L +   K +E  CS+F+FP F +   ++I+   +      Y+ L
Sbjct: 1382 VCLIGNI------LNSHTKK*IEN*CSFFIFPCFSSLSILRIECQCFPVDHLFYLLL 1230


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,292,017
Number of Sequences: 28460
Number of extensions: 183255
Number of successful extensions: 1241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of query: 670
length of database: 4,897,600
effective HSP length: 96
effective length of query: 574
effective length of database: 2,165,440
effective search space: 1242962560
effective search space used: 1242962560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)