TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146341.2 - phase: 0 /pseudo
         (875 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15028 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding ...    28  8.2

>TC15028 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding protein
           associated factor 4 {Arabidopsis thaliana;} , partial
           (8%)
          Length = 623

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 772 TFCIICKS*HKANSKYENGYSHGLGRSVLVFTSHAPA----AHVGKNC*E 817
           +FC+I         K++NG+SH +   V++ TS  P+    +H  + C E
Sbjct: 415 SFCLI-------QLKHQNGFSHTIDIRVMISTSEVPSPGLQSHPSQRCFE 287


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.374    0.166    0.667 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,332,570
Number of Sequences: 28460
Number of extensions: 245880
Number of successful extensions: 3749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 2170
Number of HSP's gapped (non-prelim): 1750
length of query: 875
length of database: 4,897,600
effective HSP length: 98
effective length of query: 777
effective length of database: 2,108,520
effective search space: 1638320040
effective search space used: 1638320040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 59 (27.3 bits)