BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146332.8 - phase: 0 /pseudo
(199 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1... 29 0.48
BP060514 29 0.48
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 28 1.1
TC9317 similar to UP|Q84MC9 (Q84MC9) At4g40042, partial (85%) 28 1.1
TC11637 similar to UP|Q9SZ53 (Q9SZ53) Protein phosphatase 2C-lik... 28 1.4
TC10536 similar to UP|Q9FN36 (Q9FN36) Gb|AAF34833.1, partial (12%) 28 1.4
BP068691 27 1.8
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 27 1.8
TC10063 27 2.4
BP040731 27 2.4
TC14828 homologue to UP|O65734 (O65734) Endoxyloglucan transfera... 27 2.4
AV419738 27 2.4
TC10119 similar to UP|Q9ZTM9 (Q9ZTM9) PGPS/D10, partial (21%) 27 2.4
AV778005 27 3.1
TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (... 27 3.1
TC9408 homologue to UP|Q8H4V6 (Q8H4V6) OJ1484_G09.21 protein, pa... 27 3.1
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t... 27 3.1
TC15605 26 4.0
AV425160 26 4.0
TC11248 homologue to UP|P93323 (P93323) Cdc2MsF protein, partial... 26 4.0
>TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1, partial
(4%)
Length = 988
Score = 29.3 bits (64), Expect = 0.48
Identities = 19/71 (26%), Positives = 36/71 (49%)
Frame = +2
Query: 77 LHSSRTGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVL 136
L +R + +++E R+ E+ ++ R K+E+M+ K+ ++ ERL + L
Sbjct: 617 LEENRKKIEEAQRREALEQQRREEERYRELEEI--QRQKEEAMRRKKQEEEQERLNQIKL 790
Query: 137 LGPQKLDPLVS 147
LG K P +S
Sbjct: 791 LGKNKSRPKLS 823
>BP060514
Length = 255
Score = 29.3 bits (64), Expect = 0.48
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = +1
Query: 24 TSSSSPFSRRYRFKRAIL-------MGKKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTA 76
TSS + + +RF + + M +S P+ W T SP+ T H H+ + A
Sbjct: 52 TSSQNLLTCTHRFTKGAII*QICASMPTRSSQQVPSTFWHTFWHSPTF-TSHWHSPTQLA 228
Query: 77 LHSSRTGL 84
L++S T +
Sbjct: 229 LNASSTSI 252
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 28.1 bits (61), Expect = 1.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 50 TPAPMWKTSSKSPSMATHHHHAMKKT-ALHSSRTGLP 85
TP T + +P+ + HHHH T LHS +P
Sbjct: 243 TPLSTLLTPNSTPTTSFHHHHLNPSTLLLHSMHAAMP 353
>TC9317 similar to UP|Q84MC9 (Q84MC9) At4g40042, partial (85%)
Length = 590
Score = 28.1 bits (61), Expect = 1.1
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = -1
Query: 20 GCSSTSSSSPFSRRYRFKRAILMGKKSGYNTPAP------MWKTSSKSPSMATHHHHAMK 73
GC STS S R +R KR L S T P +WK + K P +A
Sbjct: 353 GCFSTSLGSSHFRGWRLKRGQLGTVTSVVKTTPPAYVSIIVWKEAMKYPPANATTANASN 174
Query: 74 KTALHSSRTGLP 85
K + S + P
Sbjct: 173 KICISCSASFCP 138
>TC11637 similar to UP|Q9SZ53 (Q9SZ53) Protein phosphatase 2C-like protein
(AT4G31860/F11C18_60), partial (52%)
Length = 677
Score = 27.7 bits (60), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -3
Query: 49 NTPAPMWKTSSKSPSMATHHHHAMKKTALHSS 80
+TPAP WKT+ S A H HH + + S
Sbjct: 222 STPAPAWKTNH---SEACHSHHRQRPSRFWGS 136
>TC10536 similar to UP|Q9FN36 (Q9FN36) Gb|AAF34833.1, partial (12%)
Length = 585
Score = 27.7 bits (60), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 45 KSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGL 84
K + PA + +SS S SM HHHH + +S G+
Sbjct: 234 KRSFTLPARV-ASSSSSTSMEHHHHHQQQGVEYRNSEGGM 350
>BP068691
Length = 500
Score = 27.3 bits (59), Expect = 1.8
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -2
Query: 55 WKTSSKSPSMATHHHHAM 72
W T++KS +M HH HAM
Sbjct: 427 WLTTTKSATMIIHHPHAM 374
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 27.3 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 44 KKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALH 78
++SG T + T+S++ + THHHH LH
Sbjct: 265 QRSGKQTQNKLI*TTSRATKITTHHHHPHCHRHLH 161
>TC10063
Length = 679
Score = 26.9 bits (58), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 143 DPLVSPFSERTKGIEVDGCKR 163
DPL++PF E G E GC +
Sbjct: 12 DPLINPFVEEAPGFEGVGCNK 74
>BP040731
Length = 492
Score = 26.9 bits (58), Expect = 2.4
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = -1
Query: 53 PMWKTSSKSPSMAT--HHHHAMKKTALHSSRTGLPFKEKKEISVSARK 98
P+ ++SS SP AT HHHH ++ R P E KE ++R+
Sbjct: 435 PLGRSSSPSPRDATAGHHHHRLR-------RAKAPRGEAKE*KEASRR 313
>TC14828 homologue to UP|O65734 (O65734) Endoxyloglucan transferase, partial
(98%)
Length = 993
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Frame = +2
Query: 138 GPQKLDPLVSPFSERTKGIEVDGCKRNVS----DLSHQFHFVDPYFRGMDA 184
G +K D +PF KG +DGC+ +V+ + + P FR +DA
Sbjct: 614 GLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCATQGKSWWDQPEFRDLDA 766
>AV419738
Length = 416
Score = 26.9 bits (58), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (57%), Gaps = 1/24 (4%)
Frame = -1
Query: 47 GYNTPAPMWKT-SSKSPSMATHHH 69
GY P +WK +S SP + HHH
Sbjct: 236 GYLPPQQLWKA*TSSSPHLLYHHH 165
>TC10119 similar to UP|Q9ZTM9 (Q9ZTM9) PGPS/D10, partial (21%)
Length = 674
Score = 26.9 bits (58), Expect = 2.4
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = +2
Query: 21 CSSTSSSSPFSRRYRFKRAILMGKKSGYNTPAPMWKTSSKS-PSMATHHHHAM 72
CS T+ F R RF R+ G + ++P P W SKS P+ HHH +
Sbjct: 197 CSPTTHEGSF--RCRFHRS---GASNSSSSP-PSWMKRSKSMPANNNKHHHVV 337
>AV778005
Length = 324
Score = 26.6 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 5/43 (11%)
Frame = -1
Query: 55 WKTSSKSPSMATHHHHAMKKTALH-----SSRTGLPFKEKKEI 92
W TSS +P+ HH A H SSR+G + ++ I
Sbjct: 174 WSTSSSAPARHRRRHHRRHTPACHTPAAASSRSGRGNQSRRRI 46
>TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (43%)
Length = 515
Score = 26.6 bits (57), Expect = 3.1
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 44 KKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEISVSARKLAATL 103
+K G T ++K KS A+KKT L G+P +E+S+ + L+ ++
Sbjct: 103 EKVGEGTYGKVYKAKEKSTGQVV----ALKKTRLEMDEEGVPPTALREVSL-LQMLSQSI 267
Query: 104 WEINDLTPSRIKKESMKSN 122
+ + L + K +N
Sbjct: 268 YIVRLLKVEHVDKTPKNNN 324
>TC9408 homologue to UP|Q8H4V6 (Q8H4V6) OJ1484_G09.21 protein, partial (6%)
Length = 1105
Score = 26.6 bits (57), Expect = 3.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 45 KSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHS 79
+S TP P +T S++ HHHH ++ + S
Sbjct: 214 QSSAATPPPPLRTHLSPTSLSHHHHHEQEEAFIWS 318
>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
transporter, partial (34%)
Length = 1007
Score = 26.6 bits (57), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 55 WKTSSKSPSMATHHHHAM 72
W T+ KS +M HH HAM
Sbjct: 227 WLTNHKSATMIIHHPHAM 280
>TC15605
Length = 576
Score = 26.2 bits (56), Expect = 4.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 142 LDPLVSPFSERTKGIEVDG---CKRNVSDLSHQFHF 174
L P VSP + ++ G C+R + +S QFHF
Sbjct: 173 LPPTVSPAAATAAYVDEPGKSLCRRRIRGISCQFHF 280
>AV425160
Length = 359
Score = 26.2 bits (56), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 109 LTPSRIKKESMKSNKERDKVERLCRSVLLGPQKLDPLVSPFSERTKGIEV 158
L P+R S SNK +K R V + +K P S+ TKGI V
Sbjct: 216 LKPNR----SFPSNKGDEKRSTRHRGVAVEQEKFTPHAQVLSQMTKGINV 79
>TC11248 homologue to UP|P93323 (P93323) Cdc2MsF protein, partial (72%)
Length = 747
Score = 26.2 bits (56), Expect = 4.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 37 KRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEISV 94
K A +K G T +++ K AT A+KKT LH G+P +E+S+
Sbjct: 40 KEAFEKLEKVGEGTYGKVYRAREK----ATGKIVALKKTRLHEDDEGVPPTTLREVSI 201
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,242
Number of Sequences: 28460
Number of extensions: 58879
Number of successful extensions: 660
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of query: 199
length of database: 4,897,600
effective HSP length: 86
effective length of query: 113
effective length of database: 2,450,040
effective search space: 276854520
effective search space used: 276854520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146332.8