TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146331.8 + phase: 2 /pseudo
         (279 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8120 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, par...   438  e-124
TC17694                                                                29  1.0
TC12519 weakly similar to UP|BAC84565 (BAC84565) Zinc finger pro...    28  1.3
BP055006                                                               27  2.9
BP043272                                                               27  5.0
BP043398                                                               27  5.0
TC7873 homologue to UP|CHSY_PUELO (P23569) Chalcone synthase  (N...    27  5.0
CB827037                                                               26  6.6
CB828687                                                               26  8.6
TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface a...    26  8.6
BP038445                                                               26  8.6

>TC8120 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, partial (61%)
          Length = 1398

 Score =  438 bits (1126), Expect = e-124
 Identities = 227/280 (81%), Positives = 246/280 (87%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1   VSENGLKESVNYQVISLKDLAKSVLSEAGWSNFLCKGKKFQDPLDLALLFVGGELQSSDL 60
           VS+NGLKESVNYQVIS KDLAKSV SEAGWSNFLCKG KFQ+PLDLALLF+GGELQSSDL
Sbjct: 217 VSDNGLKESVNYQVISPKDLAKSVSSEAGWSNFLCKGNKFQEPLDLALLFIGGELQSSDL 396

Query: 61  SLNKHADSALSYLLKDSFVRSNTSMAFPYVSASEDVNLEDSLVSGFAEACGDDLGIGNVA 120
           S+ + ADS L  LL+ SF RSNTSMAFPYVSASEDV+LED LVSGF EACGDDLGIGN+A
Sbjct: 397 SVYEQADSVLLDLLEISFARSNTSMAFPYVSASEDVSLEDLLVSGFTEACGDDLGIGNIA 576

Query: 121 FLGSCSMGNGNREETAALQSVQAYLTKRKEESHKGKTDLVVFCNG-PQASKNVDSTKSEG 179
            LGSCS  N N E+T AL SVQ YLTKRKEESH GKTDLV+FCNG  QA KNVD T+SEG
Sbjct: 577 SLGSCSRDNTNHEQTGALHSVQDYLTKRKEESHSGKTDLVMFCNGHSQALKNVDRTQSEG 756

Query: 180 EVLSELISSVEESGAKYAVLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVC 239
           EVLS+ I SVEESGAKYAVLYVSD SRSI+YPSYR+LQRFLAEST GN S+N+T C+ VC
Sbjct: 757 EVLSDFIRSVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTNGNESSNATICNPVC 936

Query: 240 QLKSSLLEGLLVGIVLLIILISGLCCMMGIDSPTRFEAPQ 279
           QL SSLLEGL+VGIVLLIILISGLCCMMGID+PTRFE PQ
Sbjct: 937 QLASSLLEGLIVGIVLLIILISGLCCMMGIDTPTRFETPQ 1056


>TC17694 
          Length = 563

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 20/56 (35%), Positives = 27/56 (47%)
 Frame = -1

Query: 10  VNYQVISLKDLAKSVLSEAGWSNFLCKGKKFQDPLDLALLFVGGELQSSDLSLNKH 65
           +NY++  LK    ++ S   W+N L  G  F  P  L +L  GG   S   SLN H
Sbjct: 464 INYKIWGLKI*TTNLHSICIWANSLHSGFTFSQP-HLRVLS*GGNNFSRHFSLNLH 300


>TC12519 weakly similar to UP|BAC84565 (BAC84565) Zinc finger protein-like,
           partial (42%)
          Length = 686

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 103 VSGFAEACGDDLGIGNVAFLGSCSMGNG 130
           V+GF EACGD +G    AF   C++G G
Sbjct: 337 VTGFWEACGDPVGPSPAAFC-DCAIGLG 417


>BP055006 
          Length = 527

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 18  KDLAKSVLSEAGWSNFLCKGKKFQDPLDLA 47
           KD + +  S A   N  C G+KF  P+DLA
Sbjct: 458 KDRSNTFNSYALMQNLFCIGRKFLGPMDLA 369


>BP043272 
          Length = 441

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 13/51 (25%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
 Frame = +3

Query: 124 SCSMGNGNREETAALQSVQAYLTKRK------EESHKGKTDLVVFCNGPQA 168
           SCS G  +    + + SV++ +  +       + SH    D  +FC+GP++
Sbjct: 69  SCSGGRADSHSLSMMISVKSDVVTKSFPSCVNDASHLPSRDTTIFCSGPRS 221


>BP043398 
          Length = 460

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 13  QVISLKDLAKSVLSEAGWSNFLC 35
           Q ++LK   KS++++ GWS ++C
Sbjct: 192 QRVALKTQKKSLVTQVGWSLYIC 260


>TC7873 homologue to UP|CHSY_PUELO (P23569) Chalcone synthase
           (Naringenin-chalcone synthase) , partial (35%)
          Length = 534

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 240 QLKSSLLEGLLVGIVLLIILISGLCCMMGIDSPT 273
           +LK   L  LL  ++LLI+LI  L  +   +SPT
Sbjct: 157 ELKDQQLSLLLALLILLIVLIKALTLISTSESPT 258


>CB827037 
          Length = 443

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 21/81 (25%), Positives = 42/81 (50%), Gaps = 2/81 (2%)
 Frame = -2

Query: 182 LSELISSVEESGAKYAVLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQL 241
           +S L++S    G++ A L+ S++   I    +           +G  ST+ST+C  VC +
Sbjct: 331 ISILLASGALVGSEVAFLFFSEVPGLIFCAIFH--------VASGKISTSSTSCCSVC*I 176

Query: 242 KSSLLE--GLLVGIVLLIILI 260
            ++ ++    + GI+LL +L+
Sbjct: 175 CTASVDEFKFIEGILLLFVLL 113


>CB828687 
          Length = 554

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 15/29 (51%), Positives = 18/29 (61%)
 Frame = -2

Query: 243 SSLLEGLLVGIVLLIILISGLCCMMGIDS 271
           S  LEGL V   +L +L S LCC+M  DS
Sbjct: 379 SGKLEGLKVLKHVLYMLYSLLCCLMTHDS 293


>TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface antigen 1
           (Fragment), partial (16%)
          Length = 539

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 16/68 (23%), Positives = 32/68 (46%)
 Frame = -3

Query: 61  SLNKHADSALSYLLKDSFVRSNTSMAFPYVSASEDVNLEDSLVSGFAEACGDDLGIGNVA 120
           S +  + +AL+  L + F+ S  ++    +++S   ++  + +SG    CG     G  A
Sbjct: 453 SSDSKSTTALARFLLELFLASAKALGLDSITSSS--SMASTSISGGCATCGCCATSGGSA 280

Query: 121 FLGSCSMG 128
             G C+ G
Sbjct: 279 SCGGCATG 256


>BP038445 
          Length = 520

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 18  KDLAKSVLSEAGWSNFLCKGKKFQDPLDLA 47
           KD + +  S A   N  C G+KF  P+DLA
Sbjct: 348 KDRSNTFNSYALM*NLFCIGRKFLGPMDLA 259


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,758
Number of Sequences: 28460
Number of extensions: 48218
Number of successful extensions: 181
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of query: 279
length of database: 4,897,600
effective HSP length: 89
effective length of query: 190
effective length of database: 2,364,660
effective search space: 449285400
effective search space used: 449285400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)