BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146331.10 + phase: 0
(485 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, parti... 285 2e-77
TC17528 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Ar... 219 1e-57
AV416268 150 6e-37
AV771159 90 1e-24
BP055095 101 2e-22
AW720269 79 1e-15
BP057421 75 2e-14
TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporte... 64 5e-11
AV406931 58 4e-09
BP055390 49 1e-06
CB827630 47 9e-06
BG662257 44 5e-05
BP042918 42 2e-04
TC8675 weakly similar to UP|Q9LFH0 (Q9LFH0) PDR9 ABC transporter... 32 3e-04
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 41 4e-04
TC18647 similar to UP|Q9ASR9 (Q9ASR9) At2g01320/F10A8.20, partia... 40 7e-04
TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 40 9e-04
TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog,... 38 0.004
CB829290 37 0.006
TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like prote... 37 0.009
>TC10750 similar to UP|AAP80385 (AAP80385) ABC transporter, partial (38%)
Length = 807
Score = 285 bits (728), Expect = 2e-77
Identities = 136/255 (53%), Positives = 186/255 (72%)
Frame = +1
Query: 226 LATAQIKSMLVERFKRSTYARRVKYNIQEQSTNEGIETETNYGSQASWWKQLSTLTRRSF 285
+ TA+ L++ ++ S + + + E S +G E GS+AS+ Q TLT+RSF
Sbjct: 4 ITTAEAIRTLIDFYRTSQQSYAARQKVDEISQFKGTVLEAG-GSEASFLMQSYTLTKRSF 180
Query: 286 VNMCRDIGYYWLRIIINIIVSICVGTLYFDVGYSYTSILARGACGAFVTGFMTTISIGSL 345
+NM RD GYYWLR++I I+V+IC+GT+Y +VG Y SILARG+C +FV GF+T +SIG
Sbjct: 181 INMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF 360
Query: 346 PSVIEEMKVFYRERMNGYYGVAAYILANFISSFPFLVVIALTSCTITYNMVKFRPGFIHY 405
PS +E+MKVF RER+NG+YGV A++++N +S+ PFLV+I S TI Y MV+ PGF HY
Sbjct: 361 PSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPFLVLITFLSGTICYFMVRLHPGFSHY 540
Query: 406 VFFTLNVYGCLSVIESIMMVVASLVPNFLMGIVTGAGIIGIMMMSSGFFRLLSDLPKVVW 465
VFF L +Y ++V+ES+MM +AS+VPNFLMGI+ GAGI GI M+ SG+FRL D+PK VW
Sbjct: 541 VFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVW 720
Query: 466 RYPISYISYGAWATQ 480
RYP+SYIS+ WA Q
Sbjct: 721 RYPMSYISFHFWALQ 765
>TC17528 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Arabidopsis
thaliana;}, partial (20%)
Length = 442
Score = 219 bits (557), Expect = 1e-57
Identities = 105/122 (86%), Positives = 114/122 (93%)
Frame = +1
Query: 359 RMNGYYGVAAYILANFISSFPFLVVIALTSCTITYNMVKFRPGFIHYVFFTLNVYGCLSV 418
R+NGYYGVAAYILANF+SSFPFLV IALT+ TITYNMVKFRPG H+VFFTLN+Y +SV
Sbjct: 7 RLNGYYGVAAYILANFLSSFPFLVAIALTTSTITYNMVKFRPGLSHFVFFTLNIYSSISV 186
Query: 419 IESIMMVVASLVPNFLMGIVTGAGIIGIMMMSSGFFRLLSDLPKVVWRYPISYISYGAWA 478
IES+MMVVASLVPNFLMGI+TGAGIIGIMMM+SGFFRLLSDLPK VWRYPISYISYGAWA
Sbjct: 187 IESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWA 366
Query: 479 TQ 480
Q
Sbjct: 367 IQ 372
>AV416268
Length = 424
Score = 150 bits (378), Expect = 6e-37
Identities = 77/140 (55%), Positives = 102/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 29 LGTLTVKETIAYSAHLRLPSTMSKEEVSSIIDGTIIEMGLQDCADRLIGNWHLRGISGGE 88
L TLTV E + YSAHL+LP +MSK E D TI EMGLQD + IG W +G+SGG+
Sbjct: 3 LTTLTVGEAVYYSAHLQLPDSMSKSEKRERADFTIKEMGLQDAINTRIGGWGSKGVSGGQ 182
Query: 89 RKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNI-AHDG--RTVISSIHQPNS 145
++R SI +EILT PRLLFLDEPT GLDSA+++ V+ + ++ DG RT+++SIHQP++
Sbjct: 183 KRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVISRISSLNKKDGIQRTIVASIHQPSN 362
Query: 146 EVFALFDDLFLLARGETVYF 165
E+F LF L LL+ G+TVYF
Sbjct: 363 EIFQLFHSLCLLSSGKTVYF 422
>AV771159
Length = 486
Score = 89.7 bits (221), Expect(2) = 1e-24
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = -3
Query: 97 EILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAHDGRTVISSIHQPNSEVFALFDDLFL 156
++L P LL LDEPT GLDS +A ++ T+ +A GRTV+++IHQP+S ++ +FD + L
Sbjct: 343 KLLIHPSLLLLDEPTSGLDSTTALRILNTIPRLATGGRTVVTTIHQPSSRLYYMFDKVVL 164
Query: 157 LARGETVYFGEAKMAIEFFAEAGFPCPRKRNPSDHFL 193
L+ G +Y+G A A+E+F+ GF NP+D L
Sbjct: 163 LSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLL 53
Score = 40.4 bits (93), Expect(2) = 1e-24
Identities = 19/48 (39%), Positives = 29/48 (59%)
Frame = -2
Query: 50 MSKEEVSSIIDGTIIEMGLQDCADRLIGNWHLRGISGGERKRTSIALE 97
++++E ++ I E+GL C +IG LRGISG E++R SI E
Sbjct: 485 LTRDEKVQHVERVITELGLSGCRSSMIGGPLLRGISGAEKRRVSIGQE 342
>BP055095
Length = 538
Score = 101 bits (252), Expect = 2e-22
Identities = 55/145 (37%), Positives = 87/145 (59%), Gaps = 1/145 (0%)
Frame = +3
Query: 58 IIDGTIIEMGLQDCADRLIGNWHLRGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSA 117
+ D + +GL CAD +IG+ RGISGG++KR + ++ + LF+DE + GLDS+
Sbjct: 24 VTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS 203
Query: 118 SAFFVVQTLRNIAH-DGRTVISSIHQPNSEVFALFDDLFLLARGETVYFGEAKMAIEFFA 176
+ F + + +R + H T++ S+ QP E F LFDD+ LL+ G+ VY G + +EFF
Sbjct: 204 TTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPRENVLEFFE 383
Query: 177 EAGFPCPRKRNPSDHFLRCINSDFD 201
GF CP ++ +D FL+ + S D
Sbjct: 384 YMGFKCPERKGAAD-FLQEVTSKKD 455
>AW720269
Length = 524
Score = 79.3 bits (194), Expect = 1e-15
Identities = 43/94 (45%), Positives = 60/94 (63%)
Frame = +3
Query: 21 YVTQEDVLLGTLTVKETIAYSAHLRLPSTMSKEEVSSIIDGTIIEMGLQDCADRLIGNWH 80
+V QED LL LTVKET+ +SA RL M+ + ++ + E+GL +D +G+
Sbjct: 246 FVAQEDNLLPLLTVKETLLFSAKFRLKE-MTPNDREMRVESLMQELGLFHVSDSFVGDEE 422
Query: 81 LRGISGGERKRTSIALEILTKPRLLFLDEPTCGL 114
RGISGGERKR SI ++++ P +L LDEPT GL
Sbjct: 423 NRGISGGERKRVSIGVDMIHNPPILLLDEPTSGL 524
>BP057421
Length = 547
Score = 75.5 bits (184), Expect = 2e-14
Identities = 52/164 (31%), Positives = 82/164 (49%), Gaps = 33/164 (20%)
Frame = +3
Query: 1 MTGNVLLNGKK--KIPDYGFVAYVTQEDVLLGTLTVKETIAYSAH--------------- 43
+TG + NG K + AY++Q DV +G +TVKET+ +SA
Sbjct: 45 VTGEITYNGHKLNEFVPRKTAAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDXLSELG 224
Query: 44 ---------------LRLPSTMSKEEVSSII-DGTIIEMGLQDCADRLIGNWHLRGISGG 87
L + +T K SS+I D T+ +GL C D ++G+ RG+SGG
Sbjct: 225 RREKEAGIFPEAELDLFMKATALKGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGG 404
Query: 88 ERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAH 131
++KR + I+ + LF+DE + GLDS++ F +V+ L+ I H
Sbjct: 405 QKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVH 536
>TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporter 1,
partial (19%)
Length = 1207
Score = 63.9 bits (154), Expect = 5e-11
Identities = 60/223 (26%), Positives = 94/223 (41%), Gaps = 12/223 (5%)
Frame = +1
Query: 270 QASWWKQLSTLTRRSFVNMCRDIGYYWLRIIINIIVSICVGTLYFDVGYSYTS----ILA 325
QA WKQ R S+ R+ Y +R +++ GT+++D+G + + A
Sbjct: 121 QACLWKQ-----RWSY---WRNPPYTAVRFFFTTFIAVMFGTIFWDLGGKHKRRQDLLNA 276
Query: 326 RGACGAFVTGFMTTISIGSLPSVIEEMKVFYRERMNGYYGVAAYILANFISSFPFLVVIA 385
G+ + V S P V E VFYRE+ G Y Y A + P++ A
Sbjct: 277 VGSMYSAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSALPYAFAQILVELPYIFFQA 456
Query: 386 LTSCTITYNMVKF---RPGFIHYVFFTLNVYGCLSVIESIMMVVASLVPNFLMGIVTGAG 442
+T I Y M+ F F Y+FF +Y L M+ ++ PN + + A
Sbjct: 457 VTYGVIVYAMIGFDWTAEKFFWYLFF---MYFTLLYFTFYGMMGVAVTPNHHVASIVAAA 627
Query: 443 IIGIMMMSSGFFRLLSDLPKVVWRY-----PISYISYGAWATQ 480
I + SGF +P V WR+ P+++ YG A+Q
Sbjct: 628 FYAIWNLFSGFVVPRPSIP-VWWRWYYWACPVAWTIYGLIASQ 753
>AV406931
Length = 438
Score = 57.8 bits (138), Expect = 4e-09
Identities = 31/82 (37%), Positives = 48/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 122 VVQTLRNIAH--DGRTVISSIHQPNSEVFALFDDLFLLARGETVYFGEAKMAIEFFAEAG 179
+V +LR H +G VIS + QP E + LFDD+ L++ G+ VY G + ++FF G
Sbjct: 6 IVSSLRQYVHILNGTAVISLL-QPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 182
Query: 180 FPCPRKRNPSDHFLRCINSDFD 201
F CP ++ +D FL+ + S D
Sbjct: 183 FKCPERKGAAD-FLQEVTSKKD 245
>BP055390
Length = 488
Score = 49.3 bits (116), Expect = 1e-06
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +3
Query: 84 ISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAHDGRTVISSIHQP 143
+SGG+++R +IA IL P +L LDE T LD+ S V + L H GRTVI H+
Sbjct: 231 LSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMH-GRTVILIAHRL 407
Query: 144 NSEVFALFDDLFLLARGETVYFG 166
++ V A D + ++ G+ V G
Sbjct: 408 STVVNA--DVIAVVENGQVVETG 470
>CB827630
Length = 405
Score = 46.6 bits (109), Expect = 9e-06
Identities = 31/98 (31%), Positives = 51/98 (51%)
Frame = +2
Query: 72 ADRLIGNWHLRGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAH 131
AD+ G + SGG ++R +A+ ++ PR++++DEP+ GLD AS + ++ +A
Sbjct: 116 ADKQAGKY-----SGGMKRRLIVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVK-LAK 277
Query: 132 DGRTVISSIHQPNSEVFALFDDLFLLARGETVYFGEAK 169
R +I + H E AL D L + G G AK
Sbjct: 278 RDRAIILTTHS-MEEAEALCDRLGIXVNGSLQCVGNAK 388
>BG662257
Length = 336
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +1
Query: 68 LQDCADRLIGNWHLRGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLR 127
LQ D ++G+ ++ +SGG+++R +IA I+ P++L LDE T LD+ S V L
Sbjct: 94 LQQGYDTVVGDRGIQ-LSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALD 270
Query: 128 NIAHDGRTVI 137
+ D T++
Sbjct: 271 RVRVDRTTIV 300
>BP042918
Length = 412
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/127 (22%), Positives = 56/127 (43%), Gaps = 1/127 (0%)
Frame = -3
Query: 349 IEEMKVFYRERMNGYYGVAAYILANFISSFPFLVVIALTSCTITYNMVKFRPGFIHYVFF 408
I+ + VFY+ R + ++ Y + NF+ P + +L ITY F P +
Sbjct: 407 IQRLPVFYKHRDHLFHPAWTYTVPNFLLRIPISIFESLVWVAITYYTTGFAPEASRFFKQ 228
Query: 409 TLNVYGCLSVIESIMMVVASLVPNFLMGIVTGAGIIGIMMMSSGFFRLLSDLPK-VVWRY 467
L V+ + + +++ + ++ GA ++ ++ + GF +P VW Y
Sbjct: 227 LLVVFLIQQMAAGMFRLISGVCRTMIIANTGGALMLLLVFLLGGFLLPKRAIPDWWVWAY 48
Query: 468 PISYISY 474
IS +SY
Sbjct: 47 WISPLSY 27
>TC8675 weakly similar to UP|Q9LFH0 (Q9LFH0) PDR9 ABC transporter, partial
(13%)
Length = 727
Score = 32.3 bits (72), Expect(2) = 3e-04
Identities = 17/46 (36%), Positives = 21/46 (44%)
Frame = +3
Query: 351 EMKVFYRERMNGYYGVAAYILANFISSFPFLVVIALTSCTITYNMV 396
E V YRER G Y AY A + P+ + A ITY M+
Sbjct: 9 ERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMI 146
Score = 28.1 bits (61), Expect(2) = 3e-04
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 4/61 (6%)
Frame = +1
Query: 424 MVVASLVPNFLMGIVTGAGIIGIMMMSSGFFRLLSDLPK-VVWRY---PISYISYGAWAT 479
M + S+ PN + + + I+ + SG+F +PK VW Y P+S+ G +
Sbjct: 229 MFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTS 408
Query: 480 Q 480
Q
Sbjct: 409 Q 411
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 41.2 bits (95), Expect = 4e-04
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +3
Query: 82 RGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAHDGRTVISS 139
+ +SGG ++R ++A++++ P LL LDEP GLD + VV+ L+++ + ++ S
Sbjct: 63 QSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVS 236
>TC18647 similar to UP|Q9ASR9 (Q9ASR9) At2g01320/F10A8.20, partial (17%)
Length = 430
Score = 40.4 bits (93), Expect = 7e-04
Identities = 21/54 (38%), Positives = 32/54 (58%)
Frame = +1
Query: 1 MTGNVLLNGKKKIPDYGFVAYVTQEDVLLGTLTVKETIAYSAHLRLPSTMSKEE 54
++G + NGK + AYV QED+ LTV+ET++ + L+LP+ S EE
Sbjct: 235 LSGLLEFNGKPGSKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISSAEE 396
>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(9%)
Length = 712
Score = 40.0 bits (92), Expect = 9e-04
Identities = 21/54 (38%), Positives = 31/54 (56%)
Frame = +2
Query: 84 ISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAHDGRTVI 137
+SGG+++R +IA I+ P +L LDE T LD+ S V L + + TVI
Sbjct: 107 LSGGQKQRVAIARAIIKTPNILLLDEATSALDAESERVVQDALDKVMVNRTTVI 268
>TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog, partial
(50%)
Length = 968
Score = 37.7 bits (86), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 82 RGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRN 128
R SGG R R ++A + P +L LDEPT LD + ++ ++L+N
Sbjct: 726 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEESLKN 866
>CB829290
Length = 546
Score = 37.4 bits (85), Expect = 0.006
Identities = 30/102 (29%), Positives = 51/102 (49%)
Frame = -3
Query: 59 IDGTIIEMGLQDCADRLIGNWHLRGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSAS 118
+D T+ E G NW + G+R+ + +L K ++L LDE T +D+A+
Sbjct: 532 LDSTVSENG---------ENWSM-----GQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 395
Query: 119 AFFVVQTLRNIAHDGRTVISSIHQPNSEVFALFDDLFLLARG 160
+ QTLR + TVI+ H+ S + + D + LL++G
Sbjct: 394 DNLIQQTLRQHFSES-TVITIAHRITSVIDS--DMVLLLSQG 278
>TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like protein
(At5g02270), partial (48%)
Length = 476
Score = 36.6 bits (83), Expect = 0.009
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 78 NWHLRGISGGERKRTSIALEILTKPRLLFLDEPTCGLDSASAFFVVQTLRNIAHD-GRTV 136
+W L +S G+R+R I + +L ++L LDE T LD + ++ L+ + G T+
Sbjct: 152 SWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKECDERGATI 331
Query: 137 ISSIH 141
I + H
Sbjct: 332 IYATH 346
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,605
Number of Sequences: 28460
Number of extensions: 100688
Number of successful extensions: 693
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of query: 485
length of database: 4,897,600
effective HSP length: 94
effective length of query: 391
effective length of database: 2,222,360
effective search space: 868942760
effective search space used: 868942760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146331.10