TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146329.8 + phase: 0 
         (402 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV416122                                                               29  1.2
TC9357 homologue to UP|Q39193 (Q39193) Protein kinase (Protein k...    29  1.6
TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting...    28  2.1
AV422430                                                               28  2.7
TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting p...    28  2.7
AV779946                                                               27  4.6
BP083231                                                               27  4.6
TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, parti...    27  7.9
TC11409 similar to UP|Q9LFP7 (Q9LFP7) Serine/threonine specific ...    27  7.9

>AV416122 
          Length = 414

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -3

Query: 17  NSSSSSSLHNFTHIRSTFSSSPSVSASKSNDLISLARHYG--NCYSQLSKARLSLLVVAT 74
           +SSSSSS  +     S+ SSSPS   S S  L SLA   G     S    A   LL+   
Sbjct: 364 SSSSSSSSSSSLSSSSSSSSSPSNWTSLSGSLSSLAASLGWEEQSSVAETAGWLLLLSFE 185

Query: 75  SGTGFVLGSGGAVDLSMLSYTC 96
           SG    LGSG A     L   C
Sbjct: 184 SG----LGSGVAASFGALVGGC 131


>TC9357 homologue to UP|Q39193 (Q39193) Protein kinase (Protein kinase,
           41K)  , partial (71%)
          Length = 1181

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 12/18 (66%), Positives = 17/18 (93%)
 Frame = +3

Query: 68  SLLVVATSGTGFVLGSGG 85
           SLLV+++SG+GF+ GSGG
Sbjct: 255 SLLVISSSGSGFLDGSGG 308


>TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
           (Fragment), partial (65%)
          Length = 1272

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 30/109 (27%), Positives = 48/109 (43%), Gaps = 3/109 (2%)
 Frame = -2

Query: 5   NWNCATLYSRLVNSSSSSSLHNFTHIRSTFSSSPSVSAS-KSNDLISLARHYGNCYSQLS 63
           NWN +      +   SSSS+ NF    S  SS  S++ S  S    S A          S
Sbjct: 713 NWNISASAFFSLTILSSSSICNFFFCLSVLSSPASLALSANSRSQASRANRAFLNILIFS 534

Query: 64  KARLSLLVVATSGTGFVL--GSGGAVDLSMLSYTCLGTMMVAASASTLN 110
            A +S+ ++A+  T  +L   S GA+ L   +++ +     ++S  T N
Sbjct: 533 SATISIFLIASWTTSAILLHDSCGAISLPPSAFSRVLGESTSSSWKTTN 387


>AV422430 
          Length = 415

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
 Frame = +2

Query: 103 AASASTLNQVFEIKNDAIMR--RTSQRPLPSGRITVPH--AVGWASSVGLAGTALLATQ 157
           A     +N V  ++N +  R  R  QR LP+G++  PH   + +AS +     ALL  Q
Sbjct: 5   AGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQ 181


>TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
           (Fragment), partial (41%)
          Length = 1025

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 28/95 (29%), Positives = 44/95 (45%), Gaps = 4/95 (4%)
 Frame = -1

Query: 5   NWNCATLYSRLVNSSSSSSLHNFTHIRSTFSSSPS--VSASKSNDLISLARHYGNCYSQL 62
           NWN +      +   SSSS  +F    S FSS+ S  +SAS  +      R + N     
Sbjct: 338 NWNMSASAFLSLTIFSSSSTCDFFFCLSIFSSATSLALSASSRSQASRAKRAFLNILI-F 162

Query: 63  SKARLSLLVVATSGTGFVL--GSGGAVDLSMLSYT 95
           S A +S+ ++A+  T  +L   S GA  L +  ++
Sbjct: 161 SSATISIFLIAS*TTSAILLQASCGATTLPLSPFS 57


>AV779946 
          Length = 533

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -1

Query: 184 HPVNTWVGAVVGAIPP----LLGWAAASGDISLNSLI 216
           H V T+ GAV  A  P    +LGW +ASG I+  +L+
Sbjct: 467 HMVRTFSGAVAPAGSPHQRSMLGWRSASGTITGITLV 357


>BP083231 
          Length = 366

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 25  HNFTHIRSTFSSSP-SVSASKSNDLISLARHYGNCY 59
           H  ++ +S  SS+P S+S+   N  + + +HY  CY
Sbjct: 207 HQCSNCKSYNSSAPISISSGYVNQAVVITKHYEKCY 314


>TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, partial (3%)
          Length = 676

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 26/80 (32%), Positives = 37/80 (45%)
 Frame = -2

Query: 17  NSSSSSSLHNFTHIRSTFSSSPSVSASKSNDLISLARHYGNCYSQLSKARLSLLVVATSG 76
           +S  SSS   FT + STF+SS    +S  +   S +  + +    LSK    LL  ++ G
Sbjct: 429 SSLGSSSGFGFTSLVSTFTSSVVAFSSLGSACTSSSGFFASSSFSLSKVLRDLL--SSLG 256

Query: 77  TGFVLGSGGAVDLSMLSYTC 96
              V  S     L+ LS TC
Sbjct: 255 VSSVFFS----TLASLSCTC 208


>TC11409 similar to UP|Q9LFP7 (Q9LFP7) Serine/threonine specific protein
           kinase-like, partial (8%)
          Length = 809

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 23  SLHNFTHIRSTF 34
           SLHNFTH+RS F
Sbjct: 103 SLHNFTHLRSRF 68


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,297,510
Number of Sequences: 28460
Number of extensions: 104237
Number of successful extensions: 744
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of query: 402
length of database: 4,897,600
effective HSP length: 92
effective length of query: 310
effective length of database: 2,279,280
effective search space: 706576800
effective search space used: 706576800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)