TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146329.5 + phase: 0 
         (639 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18828 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ...   593  e-170
TC18649 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ...   121  3e-28
TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%)      30  1.6
TC10696 weakly similar to UP|SYFB_ARATH (Q9SGE9) Probable phenyl...    28  4.5
TC16079 similar to UP|O04077 (O04077) Sucrose transport protein,...    28  4.5
TC17574 similar to UP|Q8ITA6 (Q8ITA6) Ribosomal protein S15 (Fra...    27  7.7

>TC18828 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ligase  -
           spinach {Spinacia oleracea;} , partial (49%)
          Length = 946

 Score =  593 bits (1528), Expect = e-170
 Identities = 293/314 (93%), Positives = 305/314 (96%)
 Frame = +1

Query: 185 PNKEGKRSFSDVMFRRLKKFGISKTNPDDLTPEEVNKFARLDIDPDSITWRRVMDINDRF 244
           PNKEGKRSF+DVMFRRLKK GISKTNPDDLTPEEV KFARLDIDP+SITWRRVMDINDRF
Sbjct: 4   PNKEGKRSFNDVMFRRLKKLGISKTNPDDLTPEEVTKFARLDIDPNSITWRRVMDINDRF 183

Query: 245 LRKITVGQGPDEKGMVRETAFDISVASEIMAVLALTTSLTDMRERLGKMVIGNSKSGDPV 304
           LRKITVGQGPDEKGMVRET FDISVASEIMAVLALTTSL DMRERLGKMVIGNSKSGDP+
Sbjct: 184 LRKITVGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGDPI 363

Query: 305 TADDLGIGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVG 364
           TADDLG+GGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVG
Sbjct: 364 TADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVG 543

Query: 365 PGGFVVTEAGFGADIGTEKFMNIKCRYSGLTPQCAIIVATIRALKMHGGGPAVVAGKPLD 424
            GGFVVTEAGFGADIGTEKFMNIKCRYSGLTPQCAI+VATIRALKMHGGGPAVVAGKPLD
Sbjct: 544 KGGFVVTEAGFGADIGTEKFMNIKCRYSGLTPQCAIVVATIRALKMHGGGPAVVAGKPLD 723

Query: 425 HAYLTENVALVEAGCANLARHILNSKAYGANVIVAINKFSTDTDAELNAVKKAALDAGAY 484
           HAYLTENVALVEAGC N+ARHI+N+KAYG NV+VAINKFSTDT+AELNAV+ AAL AGAY
Sbjct: 724 HAYLTENVALVEAGCVNMARHIVNTKAYGVNVVVAINKFSTDTEAELNAVRNAALAAGAY 903

Query: 485 DAVICSHHAHGGRG 498
           DAVICSHHAHGG+G
Sbjct: 904 DAVICSHHAHGGKG 945


>TC18649 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ligase  -
           spinach {Spinacia oleracea;} , partial (10%)
          Length = 404

 Score =  121 bits (304), Expect = 3e-28
 Identities = 58/61 (95%), Positives = 60/61 (98%)
 Frame = +3

Query: 579 AAAKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTTTGQVIGL 638
           AAAKGAP+GFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDT TG+VIGL
Sbjct: 3   AAAKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 182

Query: 639 S 639
           S
Sbjct: 183 S 185


>TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%)
          Length = 1742

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
 Frame = +3

Query: 130  GGYSQVIPMDEFN-LHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKA 177
            GG + ++  DE N   L+ D+HA+ A +   AA I+ + +  ST +  A
Sbjct: 1311 GGAAMILMNDETNAFSLSADVHALPATHVSYAAGIEIKAYINSTATPTA 1457


>TC10696 weakly similar to UP|SYFB_ARATH (Q9SGE9) Probable phenylalanyl-tRNA
           synthetase beta chain  (Phenylalanine--tRNA ligase beta
           chain) (PheRS) , partial (30%)
          Length = 941

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 159 LAAAIDTRIFHESTQSDKALFNRLCPPNKE 188
           L A  +T I+H+  Q +   F  LCPP+ E
Sbjct: 441 LTAQYNTPIYHQMKQRESHSFPLLCPPSHE 352


>TC16079 similar to UP|O04077 (O04077) Sucrose transport protein, partial
           (18%)
          Length = 573

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 263 TAFDISVASEIMAVLALTTSLTDMRERLGKMVIGNSKSGDPVTAD 307
           T+    V S+ +A++ALT ++T      GK+   N  S  P+  D
Sbjct: 276 TSAGFGVGSKTIAIMALTAAITAPTTNAGKLPPPNKASQGPLNVD 142


>TC17574 similar to UP|Q8ITA6 (Q8ITA6) Ribosomal protein S15 (Fragment),
           partial (87%)
          Length = 523

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -3

Query: 22  DIDIANSVQPIHISEIANHL----NLTPNHYDLYGKYKAKVLLSALDELQESKDGYYVVV 77
           D+D+   +  +H ++ ANHL    ++     D  G  K   LL +L EL +   G  V  
Sbjct: 320 DLDLVEHLAVVHTNDGANHLWYDDHVPQVRLDRGGLLKLGALLLSLPELLDESHGLPVQA 141

Query: 78  GG 79
            G
Sbjct: 140 AG 135


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,210,062
Number of Sequences: 28460
Number of extensions: 112860
Number of successful extensions: 477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of query: 639
length of database: 4,897,600
effective HSP length: 96
effective length of query: 543
effective length of database: 2,165,440
effective search space: 1175833920
effective search space used: 1175833920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)