TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146329.11 + phase: 0 
         (327 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16387 similar to UP|Q94JV5 (Q94JV5) AT4g08790/T32A17_100, part...   149  6e-37
AU088878                                                              133  5e-32
TC14105 similar to UP|Q42966 (Q42966) Nitrilase  , partial (91%)       76  9e-15
TC14106 similar to UP|Q42966 (Q42966) Nitrilase  , partial (87%)       53  6e-08
TC14107 homologue to UP|Q42966 (Q42966) Nitrilase  , partial (39%)     42  1e-04
BP056759                                                               27  3.6
TC13264 UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, partial (93%)        27  6.1
TC15921 weakly similar to GB|AAB64701.1|603415|SCE9163 Yer174cp ...    27  6.1

>TC16387 similar to UP|Q94JV5 (Q94JV5) AT4g08790/T32A17_100, partial (28%)
          Length = 530

 Score =  149 bits (376), Expect = 6e-37
 Identities = 73/80 (91%), Positives = 75/80 (93%)
 Frame = +3

Query: 229 EAHWEILLRARAIENQCYVIAAAQAGTHNDKRESYGDTLIIDPWGTVVGRLPDRLSTGIV 288
           EAHWEILLRARAIE+QCYVIAAAQAG HN+KRESYGDTLIIDPWGTVV RLPDR STG  
Sbjct: 3   EAHWEILLRARAIESQCYVIAAAQAGIHNEKRESYGDTLIIDPWGTVVSRLPDRSSTGFA 182

Query: 289 VADIDLSLVDSVREKMPIAK 308
           VADIDLSLVDSVREKMPIAK
Sbjct: 183 VADIDLSLVDSVREKMPIAK 242


>AU088878 
          Length = 302

 Score =  133 bits (334), Expect = 5e-32
 Identities = 72/94 (76%), Positives = 76/94 (80%)
 Frame = +2

Query: 21  SIRRRLRASLSVTTGESTMATNSVRVAAAQMTSITDLASNFSTCSRLVKEAASAGAKLLC 80
           SI    RASLS    ES  ATNS+RVAAA MTSI DLA+NF+TCSRLVKEA  AGAKLLC
Sbjct: 23  SIPLSXRASLS-GAAESIXATNSLRVAAAXMTSINDLAANFTTCSRLVKEAXLAGAKLLC 199

Query: 81  FPEAFSFVGAKDGDSVSIAQPLDGPIMDQYCSLA 114
           FPEAFSFVGAKDGDSV  A PLDGPIM+ YCSLA
Sbjct: 200 FPEAFSFVGAKDGDSVXXAXPLDGPIMEXYCSLA 301


>TC14105 similar to UP|Q42966 (Q42966) Nitrilase  , partial (91%)
          Length = 1446

 Score = 75.9 bits (185), Expect = 9e-15
 Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 44/330 (13%)
 Frame = +2

Query: 35  GESTMATNSVRVAAAQMTSIT-DLASNFSTCSRLVKEAASAGAKLLCFPEAF-------- 85
           G  + A  +VR    Q ++I  D  +      RLV EAA  G++L+ FPEAF        
Sbjct: 137 GSDSNAPTTVRATVVQASTIFYDTPATLDKAERLVAEAAGNGSQLVVFPEAFIGGYPRGS 316

Query: 86  ---SFVGAKDGDS-------VSIAQPLDGPIMDQYCSLARESSIWLSLGGFQEKGSDPRH 135
                +G++            S A  + GP +D+  ++A +  + L +G  +  G     
Sbjct: 317 NFGVIIGSRTAKGREDFRKYHSSAIDVPGPEVDKLAAMAGKYKVHLVIGVIERDGYT--- 487

Query: 136 LFNTHVVVDDTGKIQTTYRKIHLFDVDVPGGRVYKESNFTESGKDIVAVDSPIGRLGLSV 195
           L+ T +  D  G     +RKI      +P         F + G  I   D+P+G++G  +
Sbjct: 488 LYCTALFFDSQGHYLGKHRKI------MPTAMERVMWGFGD-GSTIPVFDTPLGKIGAVI 646

Query: 196 CYDLRFPELYQLLRFQHGAQILLVPAAFTKVTGEAHWEILLRARAIENQCYVIAAAQ--- 252
           C++ + P L +   +  G +I   P A  + T    W+  +   A+E  C+V++A Q   
Sbjct: 647 CWENKMP-LLRTAMYAKGVEIYCAPTADDRKT----WQASMTHIALEGGCFVLSANQFIR 811

Query: 253 ------------AGTHNDKRES----YGDTLIIDPWGTVVGRLPDRLSTGIVVADIDLSL 296
                       +GT  D         G ++II P G V+   P+     ++ AD+DL  
Sbjct: 812 RKDYPPPPEYVFSGTEEDLTPDSVVCVGGSVIISPLGNVLAG-PNYEGEALISADLDLGE 988

Query: 297 VDSVREKMPIA------KVIVCNVYIHPTN 320
           +   +    +       +V+  +V  HPTN
Sbjct: 989 IARAKLDFDVVGHYSRPEVLSLSVKDHPTN 1078


>TC14106 similar to UP|Q42966 (Q42966) Nitrilase  , partial (87%)
          Length = 1286

 Score = 53.1 bits (126), Expect = 6e-08
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
 Frame = +2

Query: 43  SVRVAAAQMTSIT-DLASNFSTCSRLVKEAASAGAKLLCFPEAFSFVGAKDGDSVSI--- 98
           +VR    Q ++I  D  +      RL+ EAA  G++L+ FPEAF   G   G +  I   
Sbjct: 53  TVRATVVQASTIFYDTPATLDKAERLLAEAAGYGSQLVVFPEAF-IGGYPRGSNFGIIIG 229

Query: 99  AQPLDGPIMDQYCSLARESSIWLSLGGFQEKGSDPRHLFNTHVVVDDTGKIQTTYRKIHL 158
            +   GP +D+  ++A +  + L +G  +  G     L+ T +  D  G     +RK+  
Sbjct: 230 IRTAKGPEVDRLAAMAGKYKVHLVMGVIERDGYT---LYCTVLFFDSQGHYLGKHRKL-- 394

Query: 159 FDVDVPGGRVYKESNFTESGKDIVAVDSPIGRLGLSVCYDLRFPEL 204
               +P G       F + G  I   D+P+G++G  +C++ + P L
Sbjct: 395 ----MPTGMERVMWGFGD-GSTIPVFDTPLGKIGAVICWENKMPLL 517


>TC14107 homologue to UP|Q42966 (Q42966) Nitrilase  , partial (39%)
          Length = 666

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
 Frame = +3

Query: 20  TSIRRRLRASLSVTT---------GESTMATNSVRVAAAQMTSIT-DLASNFSTCSRLVK 69
           TS ++++ +++S+ T         G  + A  +VR    Q ++I  D  +      RL+ 
Sbjct: 150 TSTQKKMTSNISLVTTPPPPEVDMGSDSNAPTTVRATVVQASTIFYDTPATLDKAERLLA 329

Query: 70  EAASAGAKLLCFPEAF-------SFVGAKDGDSV-----------SIAQPLDGPIMDQYC 111
           EAA +G++L+ FPEAF       S  G   G+             S A  + GP +D+  
Sbjct: 330 EAAGSGSELVVFPEAFIGGYPRGSTFGMAVGNRTAKGREEFRKYHSSAIDVPGPEVDRLA 509

Query: 112 SLARESSIWLSLGGFQEKGSDPRHLFNTHVVVDDTGKIQTTYRKI 156
           ++A +  + L +G  +  G     L+ + +  D  G     +RK+
Sbjct: 510 AMAGKYKVHLVMGVIERDGYT---LYCSVLFFDSQGHYLGKHRKL 635


>BP056759 
          Length = 551

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = -3

Query: 15  NNTNGTSIRRRLRASLSVTTGESTMATNSVRVAAAQMTSITDLASNFST 63
           + T+G S+   +RAS + ++ EST+ T  +  A  +  SI  L +  ++
Sbjct: 387 SRTSGPSLLTTIRASNTTSSNESTLRTRLIWGAEKEAKSIPHLTARLAS 241


>TC13264 UP|Q9SWS9 (Q9SWS9) Ribosomal protein S26, partial (93%)
          Length = 691

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = +2

Query: 197 YDLRFPELYQLLRFQHGAQILLVPAAFTKVTG 228
           Y+L FP LY+ L+FQ    +L      T V+G
Sbjct: 512 YELEFPLLYRFLKFQFCVGVL*FLVVVTCVSG 607


>TC15921 weakly similar to GB|AAB64701.1|603415|SCE9163 Yer174cp
           {Saccharomyces cerevisiae;} , partial (10%)
          Length = 580

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 16/46 (34%), Positives = 20/46 (42%), Gaps = 2/46 (4%)
 Frame = -2

Query: 186 SPIGRLGLSVCYDLRFPELYQLLRFQHGAQILLVPAAFT--KVTGE 229
           SP+ + GL+    L F        F HG Q +  P  FT  K  GE
Sbjct: 447 SPLKKKGLNAILQLFFEHTSHFTFFIHGGQYITTPNQFTIHKYLGE 310


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,504,825
Number of Sequences: 28460
Number of extensions: 66927
Number of successful extensions: 282
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of query: 327
length of database: 4,897,600
effective HSP length: 91
effective length of query: 236
effective length of database: 2,307,740
effective search space: 544626640
effective search space used: 544626640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)