TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146329.10 - phase: 0 
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP042910                                                               52  3e-08
AV406689                                                               23  8.3

>BP042910 
          Length = 401

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 24/53 (45%), Positives = 34/53 (63%)
 Frame = -3

Query: 3   AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGS 55
           A   Y+EG QVGC+VKGG QD+D+G+ S S+ F  SLA ++     +F   G+
Sbjct: 399 ACKTYMEGVQVGCVVKGGFQDVDEGNGSCSQGFKMSLAGYVQKLVQDFAKCGA 241


>AV406689 
          Length = 418

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 8   IEGAQVGCLVKGGVQDLDDGDKSSS 32
           + G + GC+  GG  D D+G   S+
Sbjct: 148 VGGERGGCVAGGGAPDADEGTVHST 74


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 859,568
Number of Sequences: 28460
Number of extensions: 7383
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)