BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145767.4 + phase: 0
(218 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI967551 197 9e-52
TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive elemen... 152 3e-38
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 106 3e-24
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 102 7e-23
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 93 4e-20
TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene respon... 92 9e-20
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 91 1e-19
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 91 2e-19
TC17158 homologue to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elem... 90 3e-19
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 89 6e-19
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 83 4e-17
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 82 5e-17
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 81 2e-16
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 80 4e-16
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 79 5e-16
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 79 5e-16
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 79 6e-16
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 79 8e-16
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 78 1e-15
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 77 2e-15
>AI967551
Length = 466
Score = 197 bits (502), Expect = 9e-52
Identities = 102/142 (71%), Positives = 114/142 (79%)
Frame = +2
Query: 1 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKNHNEFLPFNENDPEEMLLYGMITSSPQEQ 60
MDCS P SS S+F P+SSFGS +S SL +N LPFNENDPEEMLLYGMITSS Q+
Sbjct: 65 MDCSSNPHSSNSDFSPESSFGSPESFSL----YNHSLPFNENDPEEMLLYGMITSSQQQA 232
Query: 61 TLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAL 120
+ NE ++ + NK+YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAL
Sbjct: 233 PIGSKVNEASSM----EKNKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAL 400
Query: 121 AYDQAAFSMRGSSATLNFSVEK 142
AYDQAAF+MRGSSATLNF +EK
Sbjct: 401 AYDQAAFAMRGSSATLNFPIEK 466
>TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive element binding
protein, partial (36%)
Length = 497
Score = 152 bits (385), Expect = 3e-38
Identities = 90/163 (55%), Positives = 103/163 (62%), Gaps = 16/163 (9%)
Frame = +3
Query: 1 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKNHNEFLPFNENDPEEMLLYGMITSSPQE- 59
MD SS S F +SS S N +LPFNENDPEEMLLYGMI
Sbjct: 39 MDSPLTFNSSNSEFSSESS-----SFETN------YLPFNENDPEEMLLYGMIADGANSL 185
Query: 60 -----------QTLSKTSNEKTTKSN----KDKNNKSYRGVRRRPWGKFAAEIRDSTRHG 104
+ +S E +++ N + KSYRGVRRRPWGKFAAEIRDSTR+G
Sbjct: 186 HHHHHHQMFDGRAMSIKEEEVSSEENGCGSSPRKEKSYRGVRRRPWGKFAAEIRDSTRNG 365
Query: 105 IRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFSVEKVKESL 147
+RVWLGTFDSAEAAALAYDQAAF+MRGSSA LNF V+ V+ESL
Sbjct: 366 VRVWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPVDVVRESL 494
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 106 bits (265), Expect = 3e-24
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Frame = +3
Query: 14 FFPQS---SFGSQDSISLNPKNH----NEFLPFNENDPEEMLLYGMITSSPQEQTLSKTS 66
F PQ SF S N N N +P + + + TS + + S +S
Sbjct: 171 FLPQQVVPSFSKPPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSS 350
Query: 67 NEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAA 126
++ T+ ++ NNK YRGVRRRPWGKFAAEIRD R G RVWLGTFD+A AA AYD+AA
Sbjct: 351 SDHQTQ--EEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAA 524
Query: 127 FSMRGSSATLNFSVE 141
F MRGS A LNF +E
Sbjct: 525 FKMRGSRAILNFPLE 569
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 102 bits (253), Expect = 7e-23
Identities = 61/143 (42%), Positives = 79/143 (54%)
Frame = +1
Query: 9 SSKSNFFPQSSFGSQDSISLNPKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNE 68
SS F SF + ++++ + N P + + ++ +SSP+ + K E
Sbjct: 7 SSFCTFLESFSFQADTEVAMSHEAKNSITPTHSGETQK-------SSSPEPEVSGK--QE 159
Query: 69 KTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFS 128
+T + YRGVRRRPWGKFAAEIRD TR G RVWLGTFD+ AA AYD AAF
Sbjct: 160 QTCYQGR-----RYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDYAAFR 324
Query: 129 MRGSSATLNFSVEKVKESLRDMN 151
MRG A LNF +E K S + N
Sbjct: 325 MRGRKAILNFPLEAGKASPKPSN 393
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 92.8 bits (229), Expect = 4e-20
Identities = 51/112 (45%), Positives = 64/112 (56%)
Frame = +2
Query: 30 PKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRP 89
PK E++ F DP P Q + + +K + YRGVR+RP
Sbjct: 452 PKKTTEWIQFGNPDPNP---------DPVVQAQPEPAEKK----------QHYRGVRQRP 574
Query: 90 WGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFSVE 141
WGKFAAEIRD + G RVWLGTFD+A AA AYD+AAF +RGS A LNF ++
Sbjct: 575 WGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLD 730
>TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
element binding factor 5 (ATERF5) {Arabidopsis
thaliana;} , partial (22%)
Length = 785
Score = 91.7 bits (226), Expect = 9e-20
Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +1
Query: 17 QSSFGSQDSISLN-PKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKSNK 75
Q + + S+ ++ PK E++ F E PE +E + K
Sbjct: 469 QPALSRRKSLEISLPKKTTEWIQFGEVAPEP--------------------SEASAKPEV 588
Query: 76 DKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAT 135
+ K YRGVR+RPWGKFAAEIRD + G R+WLGTFD+A AA YD+AAF+ RG A
Sbjct: 589 EVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFDTAIEAAKVYDRAAFTFRGLEAV 768
Query: 136 LNF 138
LNF
Sbjct: 769 LNF 777
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 91.3 bits (225), Expect = 1e-19
Identities = 51/105 (48%), Positives = 62/105 (58%), Gaps = 5/105 (4%)
Frame = +2
Query: 63 SKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAY 122
S SNE+ K K YRG+R+RPWGK+AAEIRD R G+RVWLGTF++AE AA AY
Sbjct: 467 SVESNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAY 643
Query: 123 DQAAFSMRGSSATLNFSVEKVKESLR-----DMNYLLSNDNECSP 162
D A +RG+ A +NF VE S R + L N N P
Sbjct: 644 DAEARRIRGNKAKVNFPVEPQLSSKRLKANPEKQLLKGNPNSVQP 778
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 90.5 bits (223), Expect = 2e-19
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Frame = +3
Query: 20 FGSQDSIS----LNPKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKSNK 75
F S +SI L ++NE ++P + + S Q+ S S K S +
Sbjct: 78 FSSLESIQHFLLLEHDSNNETCYSPSDNPFPIQDFDSSDGSSQDTNNSSPSGCKKGSSAE 257
Query: 76 DKNN-------KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFS 128
+++ K +RGVRRRPWGKFAAEIRD ++G RVWLGT+++ E A LAYD+AAF
Sbjct: 258 ARSSHAPPAEWKRFRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFK 437
Query: 129 MRGSSATLNF 138
+RG A LNF
Sbjct: 438 IRGRKAKLNF 467
>TC17158 homologue to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (35%)
Length = 554
Score = 90.1 bits (222), Expect = 3e-19
Identities = 58/150 (38%), Positives = 75/150 (49%), Gaps = 15/150 (10%)
Frame = +2
Query: 1 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKN--------HNEF-LP-FNENDPEEML-- 48
M C F S NF + N N +N+F +P F + + +
Sbjct: 83 MSCDFSSLESIQNFLLLELEHDNSHVDWNASNNETCYSPSYNQFPIPNFQSSGSSQAVTN 262
Query: 49 ---LYGMITSSPQEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGI 105
+ G + SP K S+ +SN K YRGVRRRPWGKFA EIRD ++G
Sbjct: 263 LDSVVGPVKKSPG---CKKGSSAAARESNAPPVWKRYRGVRRRPWGKFAGEIRDPKKNGA 433
Query: 106 RVWLGTFDSAEAAALAYDQAAFSMRGSSAT 135
RVWLGT+++ E AALAYD+AAF MRG T
Sbjct: 434 RVWLGTYETEEEAALAYDKAAFKMRGKGQT 523
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 89.0 bits (219), Expect = 6e-19
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = +3
Query: 56 SPQEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSA 115
SP + + + E + + + + YRGVR+RPWGK+AAEIRD + RVWLGTF++A
Sbjct: 132 SPMVKPVYEYRTENVREETEQQPKRKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFNTA 308
Query: 116 EAAALAYDQAAFSMRGSSATLNFSVEKVK----ESLRDMNYLLSNDNECSPVIALKRKH 170
E AA AYDQA+ RG+ A LNF E V+ S+ SN N P++ + +H
Sbjct: 309 EEAARAYDQASLRFRGNKAKLNFP-ENVRLLQQPSINQPTTHFSNSNSSEPIVHAEAQH 482
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 82.8 bits (203), Expect = 4e-17
Identities = 41/81 (50%), Positives = 53/81 (64%)
Frame = +3
Query: 58 QEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA 117
Q T ++ K K + YRG+R+RPWGK+AAEIRD R G+RVWLGTF++AE
Sbjct: 324 QPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEE 500
Query: 118 AALAYDQAAFSMRGSSATLNF 138
AA AYD+ A +RG A +NF
Sbjct: 501 AARAYDREARKIRGKKAKVNF 563
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 82.4 bits (202), Expect = 5e-17
Identities = 55/137 (40%), Positives = 74/137 (53%), Gaps = 10/137 (7%)
Frame = +3
Query: 12 SNFFPQSSFGSQDS------ISLNPKNHNEFLPFNEND----PEEMLLYGMITSSPQEQT 61
S P S F + D+ +S P + + P N +D P++ + E+
Sbjct: 177 SELDPFSDFAAFDAASAGAAVSTTPTSKSSSPPLNFDDVIQVPDQKVAG---CDKKGEKK 347
Query: 62 LSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALA 121
S + K N KN YRG+R+RPWGK+AAEIRD + G+RVWLGTF +AE AA A
Sbjct: 348 KSVVGSGGAGKKNARKN--VYRGIRQRPWGKWAAEIRDPQK-GVRVWLGTFPTAEEAARA 518
Query: 122 YDQAAFSMRGSSATLNF 138
YD+AA +RG A LNF
Sbjct: 519 YDEAAKRIRGDKAKLNF 569
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 80.9 bits (198), Expect = 2e-16
Identities = 51/123 (41%), Positives = 73/123 (58%), Gaps = 4/123 (3%)
Frame = +1
Query: 72 KSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRG 131
K + + +YRGVR+R WGK+ AEIR+ R G R+WLGTF +A AALAYD+AA +M G
Sbjct: 358 KGGPENSRCNYRGVRQRTWGKWVAEIREPNR-GKRLWLGTFATAIGAALAYDEAARAMYG 534
Query: 132 SSATLNFSVEKV----KESLRDMNYLLSNDNECSPVIALKRKHSMKRKMDEKKKKHDTDV 187
SSA LNF V +ESL+D + ++ND+ S + A+ K + + DV
Sbjct: 535 SSARLNFPNVAVSHFSEESLKDSS--VANDDSGSSMAAVLANTESKVSSNNSGVGTEEDV 708
Query: 188 RLD 190
++
Sbjct: 709 DME 717
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 79.7 bits (195), Expect = 4e-16
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Frame = +3
Query: 4 SFIPFSSKSNFFPQSSFGSQDS-----ISLNPKNHNEFLPFNENDPEEMLLYGMITSSPQ 58
SFIP + F P S I+++ + HN N N Y ++SS
Sbjct: 57 SFIPLPK*T*FLPHKPSYSNFKYPILFITMSVEPHNSETESNSNSNS----YTSLSSSSP 224
Query: 59 EQTLSKTSNEKTTKSNKDKNNKS-YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA 117
Q SN TK N++ N + YRGVR R WGK+ +EIR+ + R+WLGTF + E
Sbjct: 225 PQ-----SNNNNTKRNRESNTHAVYRGVRMRTWGKWVSEIREPRKKS-RIWLGTFCTPEM 386
Query: 118 AALAYDQAAFSMRGSSATLNF 138
AA A+D AA S++GS+A LNF
Sbjct: 387 AARAHDVAALSIKGSAAILNF 449
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 79.3 bits (194), Expect = 5e-16
Identities = 41/72 (56%), Positives = 50/72 (68%)
Frame = +2
Query: 67 NEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAA 126
+E+ K K YRG+R+RPWGK+AAEIRD R G+RV LGTF++AE AA AYD AA
Sbjct: 293 SEEGIKKGKRVRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVGLGTFNTAEEAAQAYDDAA 469
Query: 127 FSMRGSSATLNF 138
+RG A LNF
Sbjct: 470 KRIRGDKAKLNF 505
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 79.3 bits (194), Expect = 5e-16
Identities = 39/57 (68%), Positives = 44/57 (76%)
Frame = +2
Query: 82 YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNF 138
YRGVR+RPWG+FAAEIRD + RVWLGTFDSAE AA AYD AA ++RG A NF
Sbjct: 434 YRGVRKRPWGRFAAEIRDPMKKA-RVWLGTFDSAEEAARAYDAAARALRGPKAKTNF 601
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 79.0 bits (193), Expect = 6e-16
Identities = 37/78 (47%), Positives = 51/78 (64%)
Frame = +1
Query: 61 TLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAL 120
T++ TSN K + +K YRG+R+R WGK+ AE+R+ + R+WLG++ S AAA
Sbjct: 88 TITTTSNSSRENKRKHQQDKPYRGIRQRKWGKWVAEVREPNKRS-RIWLGSYASPVAAAR 264
Query: 121 AYDQAAFSMRGSSATLNF 138
AYD A F +RG SA LNF
Sbjct: 265 AYDTAVFYLRGPSARLNF 318
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 78.6 bits (192), Expect = 8e-16
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = +2
Query: 71 TKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMR 130
+ S+ YRGVR+RPWG++AAEIRD + RVWLGTFD+ E AALAYD AA S+R
Sbjct: 152 SSSSSASREGHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARSLR 328
Query: 131 GSSATLNF 138
G+ A NF
Sbjct: 329 GAKAKTNF 352
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 78.2 bits (191), Expect = 1e-15
Identities = 44/83 (53%), Positives = 51/83 (61%)
Frame = +1
Query: 56 SPQEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSA 115
SP T+ + T K+ +RGVR+RPWG+FAAEIRD + RVWLGTFDSA
Sbjct: 172 SPVTTTMRRGRVADPTPETKETR---FRGVRKRPWGRFAAEIRDPWKKA-RVWLGTFDSA 339
Query: 116 EAAALAYDQAAFSMRGSSATLNF 138
E AA AYD AA S RG A NF
Sbjct: 340 EDAARAYDAAARSFRGPKAKTNF 408
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 77.4 bits (189), Expect = 2e-15
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +3
Query: 61 TLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAL 120
T + ++ K K + + +RGVR+RPWG++AAEIRD + RVWLGTFD+AE AA
Sbjct: 114 TTAVSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAR 290
Query: 121 AYDQAAFSMRGSSATLNF 138
AYD AA RG A NF
Sbjct: 291 AYDAAARQFRGPKAKTNF 344
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,335,851
Number of Sequences: 28460
Number of extensions: 38660
Number of successful extensions: 297
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of query: 218
length of database: 4,897,600
effective HSP length: 87
effective length of query: 131
effective length of database: 2,421,580
effective search space: 317226980
effective search space used: 317226980
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC145767.4