TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145767.3 - phase: 0 
         (807 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP080021                                                               93  1e-19
BP033315                                                               52  5e-07
BP031377                                                               49  4e-06
TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)        47  2e-05
AW163886                                                               42  5e-04
AV769827                                                               40  0.001
AW428780                                                               40  0.001
BP057320                                                               32  0.30
BP083725                                                               32  0.30
AV773581                                                               30  2.0
TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter ...    30  2.0
AU252041                                                               29  3.4
TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete    28  7.5
TC9949 weakly similar to UP|O82047 (O82047) PRIB5 protein (Fragm...    27  9.8

>BP080021 
          Length = 393

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 42/119 (35%), Positives = 74/119 (61%), Gaps = 1/119 (0%)
 Frame = -2

Query: 265 GLFICSYITDFLGTHPIVGAFVFGLILPHG-KFADMVMEMSDDFVTGILCPVYFSGFGFK 323
           G+ +C+++TD +G H I GAFVFGL +P G +FA  V +  +DFV+ +L P+YF+  G K
Sbjct: 374 GVMLCAFVTDLIGIHSIFGAFVFGLTIPQGGEFASRVTKRIEDFVSTLLLPLYFASSGLK 195

Query: 324 LDLPVLWNTPNSVLMMLIMVLLCIPKVLSSLIVTFFFGMPARDGLSIGLLLNTKGVMAV 382
            D+  L       L+++++   C+ K+L +  V     +P R+ L++G+L+N K  +++
Sbjct: 194 TDVAKLHGVVAWGLLLVVIATACVGKILGTFAVAMMCTLPVRESLTLGVLMNIKAWLSL 18


>BP033315 
          Length = 433

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = -1

Query: 712 EVHSDTGEEIPTLLNEIDKPGYDLYIVGQGSGKNKTIFLKLLE-WCDHPELGVIGDILAS 770
           EV  D  E   ++   ID   +DL +VG+   +  ++ LK  E W + PELG IGD+LAS
Sbjct: 412 EVVKDGIEMSSSIRRSIDY--FDLVMVGREHPQTPSVLLKGHEKWSECPELGTIGDMLAS 239

Query: 771 TSFGTHSSVLIVQQYMVG 788
             F T +S+L+VQQ  +G
Sbjct: 238 PDFVTKASILVVQQQRIG 185


>BP031377 
          Length = 401

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = -3

Query: 733 YDLYIVGQGSGKNKTIFLKLLEWCDHPELGVIGDILASTSFGTHSSVLIVQQ 784
           +D  IVG+ +G    +   L  W ++ ELGVIGD+LAS    T +S+L+VQQ
Sbjct: 393 FDFIIVGRRNGVKSEMTAGLENWTEYTELGVIGDLLASPDMETKASILVVQQ 238


>TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)
          Length = 444

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 39/68 (56%)
 Frame = +3

Query: 10  SASNNIWMTDDVMIKRVPLLCLQIAYNLLVSRFLFFILKPLHVPLIVAQMLTGFSVSRSL 69
           ++SN +W  D+ +    PLL +Q    L++SR L F+ KPL  P ++A+++ G  +  S 
Sbjct: 213 TSSNGVWQGDNPLDFAFPLLIVQTIIVLVLSRSLAFLFKPLRQPKVIAEIVGGILLGPSA 392

Query: 70  LGYFEGVI 77
           LG  E  +
Sbjct: 393 LGRSESYL 416


>AW163886 
          Length = 177

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 35/53 (65%)
 Frame = +1

Query: 443 ELRVVACVHNAKHATNIIHVLEATNATRISPVHVSAVHLLELTRHGTAILVSQ 495
           +LRV+AC+H   +  +II ++E+T  T  S + +  +HL+ELT   ++I++ Q
Sbjct: 16  QLRVMACIHGPSNIPSIIGLIESTCGTSNSLLKLFIMHLVELTERSSSIMMVQ 174


>AV769827 
          Length = 438

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = -2

Query: 708 YLEKEVHSDTGEEIPTLLNEIDKPGYDLYIVGQGSGKNKTIFLKLLEWCDHPELGVIGDI 767
           Y+EK V  +  EE+  +    D   YDL IVG+G   +  +        ++ ELG +GDI
Sbjct: 437 YIEK-VCGNIVEEVLAIGESGD---YDLIIVGKGRFPSTMVAELAERHAEYAELGPVGDI 270

Query: 768 LA-STSFGTHSSVLIVQQYMV 787
           LA ST     SSVL++QQ+ V
Sbjct: 269 LASSTGHKMRSSVLVIQQHDV 207


>AW428780 
          Length = 330

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +2

Query: 705 SIVYLEKEVHSDTGEEIPTLLNEIDKPGYDLYIVGQGSG-KNKTIFLKLLEW-CDHPELG 762
           ++ Y+EK+   +  EE+ T+    +   Y+  IVG+G      T+ L + +   +H ELG
Sbjct: 17  AVEYIEKDT-CNIAEEVVTIGKGKE---YEFIIVGKGQQILESTMMLNIQDSRLEHAELG 184

Query: 763 VIGDILASTSFGTHSSVLIVQQY 785
            +GD+L S+  G  SSVL++Q +
Sbjct: 185 PVGDLLTSSGQGITSSVLVIQDH 253


>BP057320 
          Length = 433

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -2

Query: 279 HPIVGAFVFGLILPH-GKFADMVMEMSDDFVTGILCP-VYFSGFGFKLDLPVLWNTPNSV 336
           H +  A VF +   H G F  +++E  D F   ++      +GF   L L +LW + N +
Sbjct: 333 HCMASALVFDIGSDHLGSFVQLILEDKDVFKGMVMVEGCILNGF---LKLHLLWASSN*L 163

Query: 337 LMMLIMVLLC 346
           ++ML++ L+C
Sbjct: 162 IIMLLLFLVC 133


>BP083725 
          Length = 458

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 17/41 (41%), Positives = 26/41 (62%)
 Frame = +1

Query: 10  SASNNIWMTDDVMIKRVPLLCLQIAYNLLVSRFLFFILKPL 50
           +ASN  +  D+ +   VPL  LQI   L+V+R L ++L+PL
Sbjct: 331 AASNGAFQGDNPLDYAVPLAILQICLVLVVTRGLAYLLRPL 453


>AV773581 
          Length = 506

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/82 (26%), Positives = 43/82 (51%)
 Frame = -1

Query: 53  PLIVAQMLTGFSVSRSLLGYFEGVITLFYNPRGILAVETISNLGIMYYVFLSGLEMNSDT 112
           P+IV  +L G     SL+G   G +        ++ VET+++LG+++ +F  GLE    +
Sbjct: 308 PVIVGYLLAG-----SLIG--PGGVKFISE---MVQVETVAHLGVVFLLFALGLEF---S 168

Query: 113 ILRSRKKGTSMAIAGIVTSMLF 134
           + + +  G    + G++  +LF
Sbjct: 167 LSKLKAVGPVAVLGGLLQILLF 102


>TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter - like
           protein (UDP-galactose transporter-like protein),
           partial (98%)
          Length = 768

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
 Frame = +1

Query: 106 LEMNSDTILRSRKKGTSMAIAGIVTSMLFGVGFLTLQQKLLDKKEKTHIKAYLFWCLTLS 165
           L  NSD +L++  +G  MAIA  + S   GV      + ++ K+   +I    FW     
Sbjct: 49  LNSNSDHVLQTPFQGWVMAIAMALLSGFAGV----YTEAIIKKRPSRNINVQNFWLYVFG 216

Query: 166 VTGFPVLARILAKLKLLYTK---LGKDTLTAAML-TDAYGWVLFTLLIPAANNWGEGYYL 221
           + GF  +A ++     +  K    G   +T  M+   A   +  ++++  A+N  + Y  
Sbjct: 217 M-GFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMKYADNIVKVYST 393

Query: 222 S-------VITTFLF 229
           S       V++ FLF
Sbjct: 394 SVAMLLTAVVSVFLF 438


>AU252041 
          Length = 326

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/67 (31%), Positives = 37/67 (54%)
 Frame = +1

Query: 37  LLVSRFLFFILKPLHVPLIVAQMLTGFSVSRSLLGYFEGVITLFYNPRGILAVETISNLG 96
           L++S  L      L V ++++  + GFS +R LLG  +G+  L  N  GIL    +S + 
Sbjct: 16  LILSLLLSATQSKLWVVVLMSHQIFGFSTARVLLG--QGLFVLMRNIPGIL----LSLMV 177

Query: 97  IMYYVFL 103
           +++ +FL
Sbjct: 178 LLFPMFL 198


>TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete
          Length = 984

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 5/47 (10%)
 Frame = +2

Query: 517 EIITTAFKEFVEQYNAVRFDTSS-----VVSSYTTIHEDIYNVAEEK 558
           ++ T   KEF E+      +TS+     V S++TT+  +IYN+  +K
Sbjct: 476 DVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKK 616


>TC9949 weakly similar to UP|O82047 (O82047) PRIB5 protein (Fragment),
           partial (37%)
          Length = 587

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/76 (19%), Positives = 32/76 (41%)
 Frame = -2

Query: 214 NWGEGYYLSVITTFLFIAFCFTVVRPILTPIIENRTNKNMWRKSHMLDVFIGLFICSYIT 273
           NW   +Y+S +  F++ +  F            ++++ N +   +   V   +FIC  + 
Sbjct: 286 NWTSKFYISTVLHFIYCSILFE----------RSKSHSNSFSMCNKQQVLSRIFICKLLD 137

Query: 274 DFLGTHPIVGAFVFGL 289
            F+   P    ++F L
Sbjct: 136 CFVIPSPCFKNWLFPL 89


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,716,938
Number of Sequences: 28460
Number of extensions: 191062
Number of successful extensions: 1261
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of query: 807
length of database: 4,897,600
effective HSP length: 98
effective length of query: 709
effective length of database: 2,108,520
effective search space: 1494940680
effective search space used: 1494940680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)