TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145513.12 + phase: 0 
         (304 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV770032                                                               87  3e-18
TC15764 weakly similar to GB|AAL31246.1|16974485|AY061919 AT4g32...    62  9e-11
TC17214                                                                54  4e-08
TC14517                                                                52  2e-07
TC16063                                                                39  0.001
AV427247                                                               38  0.002
TC12203 similar to UP|Q9SXX9 (Q9SXX9) FAS1 (Fragment), partial (...    30  0.66
BU494229                                                               28  1.5
TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete     28  1.9
BP080584                                                               28  2.5
TC11795                                                                27  5.6
AV780146                                                               27  5.6
TC9370                                                                 26  7.3
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla...    26  7.3
BI419148                                                               26  9.5

>AV770032 
          Length = 559

 Score = 87.4 bits (215), Expect = 3e-18
 Identities = 39/103 (37%), Positives = 61/103 (58%)
 Frame = -2

Query: 161 GNHEFIDVVRMRSGSSTWQNRYFVELDFAVQFEIARPTSRYSEIMSYVPGIFVGNSEELK 220
           G H F+DV+   + S     R  +EL+F  +FE+A+ +  Y+ ++  +P +FVG  E L 
Sbjct: 558 GEHSFLDVID-NTNSKKGVVRVMIELNFRAEFEMAKGSEDYNRLVRKLPEVFVGKVERLS 382

Query: 221 RTVLALCGAVKLCLRSRGLSIPPWRKNRYMQNKWFGPYRRTTN 263
             +  LC A K C++ + + + PWRK+RYMQ KW GP  R T+
Sbjct: 381 NVIKILCMAAKRCMKEKKMHLGPWRKHRYMQAKWLGPCERNTS 253


>TC15764 weakly similar to GB|AAL31246.1|16974485|AY061919
           AT4g32480/F8B4_180 {Arabidopsis thaliana;}, partial
           (24%)
          Length = 608

 Score = 62.4 bits (150), Expect = 9e-11
 Identities = 26/68 (38%), Positives = 40/68 (58%)
 Frame = +1

Query: 193 EIARPTSRYSEIMSYVPGIFVGNSEELKRTVLALCGAVKLCLRSRGLSIPPWRKNRYMQN 252
           E+AR +  Y+ ++  +P ++VG  E L   +  LC A K C +   + + PWRK RYM+ 
Sbjct: 1   ELARASEGYNRLVWRLPEVYVGKVERLSNVIKILCMAAKRCTKENKMHMGPWRKLRYMEA 180

Query: 253 KWFGPYRR 260
           KW GP +R
Sbjct: 181 KWLGPCKR 204


>TC17214 
          Length = 556

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +2

Query: 211 IFVGNSEELKRTVLALCGAVKLCLRSRGLSIPPWRKNRYMQNKWFGPYRR 260
           IFVG  ++L+  V  +  A K  LR +G+ +PPWR+  Y+Q KW  PY R
Sbjct: 2   IFVGKCDQLQSIVALVSEAAKQSLRKKGMHVPPWRRVEYVQAKWLSPYSR 151


>TC14517 
          Length = 697

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 32/100 (32%), Positives = 50/100 (50%)
 Frame = +1

Query: 148 CKTRWDSSGGLTAGNHEFIDVVRMRSGSSTWQNRYFVELDFAVQFEIARPTSRYSEIMSY 207
           CK   + +  LT  ++E+IDV    +G       Y +    A +F+I+ PT  Y+ ++  
Sbjct: 100 CKYS*EKNARLTVRDYEYIDVNFSGNG-------YIIVCSLATEFKISHPTYHYTFLVEI 258

Query: 208 VPGIFVGNSEELKRTVLALCGAVKLCLRSRGLSIPPWRKN 247
           +P IFV   EELKR V  LC A+K  +    L +   R +
Sbjct: 259 LPLIFVC*MEELKRVVRLLCSALKGSMERMELQLSEMRSS 378


>TC16063 
          Length = 585

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 37/158 (23%), Positives = 62/158 (38%), Gaps = 3/158 (1%)
 Frame = +3

Query: 13  FNDEAKARLVGADLRRLSDVSSGSEHSGTGECDSSPSLSELVHGFLEEDDGNVCDSTG-- 70
           + DE     V  +   L D+   S        +  P   +L       DDG   ++T   
Sbjct: 135 YADEQNTSFVDVEFEFLDDIGEISLGKRASSDEFGPIEMDLDEDHERVDDGRTEENTSFW 314

Query: 71  -NDFDSERVDSVSDSMDSVEDLLRLSAENANADSYLNMLRLHVSEAAVKFDFLKKQSVSV 129
            N F   + +    S  SVE  +R + +    D Y + +     E     +       + 
Sbjct: 315 DNQFQLLQTNLCRTS--SVESRIRNATKEVVHDIYSSGI-----ECGCSRELAASYCRNC 473

Query: 130 YNRNVMSFLREKGHNAAICKTRWDSSGGLTAGNHEFID 167
             R V   L++ G N+AIC+T+W +S  + +G H F+D
Sbjct: 474 LMREVSRRLQKAGFNSAICQTKWRNS-SVPSGEHTFLD 584


>AV427247 
          Length = 225

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 239 LSIPPWRKNRYMQNKWFGPYRRTTNPVHGNPVPDVVSSFSGVKCR 283
           + +PPWR   Y+Q KW  P+ R T+   GN + D V  F   +CR
Sbjct: 10  MPLPPWRSLAYLQAKWQSPFERYTHS-EGNNISD-VDCFDHKQCR 138


>TC12203 similar to UP|Q9SXX9 (Q9SXX9) FAS1 (Fragment), partial (24%)
          Length = 343

 Score = 29.6 bits (65), Expect = 0.66
 Identities = 21/65 (32%), Positives = 26/65 (39%), Gaps = 4/65 (6%)
 Frame = +2

Query: 29 LSDVSSGSEHSGTGECDSSPSLSE----LVHGFLEEDDGNVCDSTGNDFDSERVDSVSDS 84
          LSD     E     EC  S   SE    +  G+L ED+G   D    D D E  +S    
Sbjct: 20 LSDCDKDEEECQE-ECSKSDGESEDGFFVPDGYLSEDEGEQVDRMETDIDVEGANSSPSC 196

Query: 85 MDSVE 89
           D +E
Sbjct: 197KDDIE 211


>BU494229 
          Length = 412

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 15/41 (36%), Positives = 19/41 (45%)
 Frame = +1

Query: 64  NVCDSTGNDFDSERVDSVSDSMDSVEDLLRLSAENANADSY 104
           +V D   N+  S R+     S D V+ LLRL  E    D Y
Sbjct: 19  DVIDDHRNEMSSSRLREAEGSEDLVDVLLRLQKEQQEPDQY 141


>TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete
          Length = 1793

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = +1

Query: 149 KTRWDSSGGLTAGNHEFIDVVRMRSGS 175
           + + D  GG+  G+HE  ++VR+R GS
Sbjct: 445 REKMDQHGGVATGSHERNELVRVRHGS 525


>BP080584 
          Length = 507

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 244 WRKNRYMQNKWFGPYRRTTNPVHGNPVPDVVSSFSGVKCRLV 285
           W   + + N +F  Y R+ +P HG         F   KC L+
Sbjct: 471 WEIWKCLWNSFFWAYSRSISPSHGTTPSSRSEGFQDTKCELL 346


>TC11795 
          Length = 577

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
 Frame = -2

Query: 240 SIPPWRKNRYMQNKWFGPYRRTTNPVHGNPV-PDVVSSFSGVKCRLVGFDNAMSEIKHGV 298
           ++ P  + R ++ +  G + ++T P+    V P  +  +S     L+GF   +S++ +GV
Sbjct: 387 TLVPSIRTRAIEKESIGSHSQST*PIMV*KVAPQFILRYSATTSLLLGFSPPLSDLSNGV 208

Query: 299 A 299
           A
Sbjct: 207 A 205


>AV780146 
          Length = 519

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = -2

Query: 161 GNHEFIDVVRMRSGSSTWQNRYFVELDFAVQ 191
           G  EFI+V   RS S  W N    E  FA++
Sbjct: 407 GQQEFIEVKATRSPSKDWFNITMREWQFAIE 315


>TC9370 
          Length = 632

 Score = 26.2 bits (56), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 177 TWQNRYFVELDFAVQFEIARPTSR 200
           +W+NR++V +++A  F   R  SR
Sbjct: 78  SWRNRFYVAINWATTFVFGRDISR 149


>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
          HD2-P39, partial (40%)
          Length = 620

 Score = 26.2 bits (56), Expect = 7.3
 Identities = 14/32 (43%), Positives = 18/32 (55%)
 Frame = +3

Query: 59 EEDDGNVCDSTGNDFDSERVDSVSDSMDSVED 90
          EEDD +  D   +D D E  D+ SDS +S  D
Sbjct: 6  EEDDSDDEDDEDDDSDEEMDDADSDSDESDSD 101


>BI419148 
          Length = 537

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 233 CLRSRGLSIPPWRKNRYMQNKWFGPYRR 260
           C R R     PWR   Y   KW   +RR
Sbjct: 329 CCRPRSGGSHPWRAATYRHGKWRERWRR 246


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,829,166
Number of Sequences: 28460
Number of extensions: 64159
Number of successful extensions: 352
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of query: 304
length of database: 4,897,600
effective HSP length: 90
effective length of query: 214
effective length of database: 2,336,200
effective search space: 499946800
effective search space used: 499946800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)