BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145513.11 - phase: 0 /pseudo
(820 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutat... 36 0.028
TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-li... 35 0.037
BP036178 34 0.082
TC17953 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17... 33 0.18
TC14876 weakly similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein (... 33 0.24
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 32 0.53
BP049972 31 0.90
BP058388 30 1.5
AV420911 30 1.5
TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14... 30 1.5
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 29 2.6
TC8825 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specific ... 29 2.6
TC9034 29 3.4
AV406674 29 3.4
TC8037 similar to UP|AAR14273 (AAR14273) Predicted protein, part... 29 3.4
AV772111 28 4.5
AV415462 28 4.5
TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber... 28 4.5
TC14735 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {Ar... 28 4.5
>TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (4%)
Length = 513
Score = 35.8 bits (81), Expect = 0.028
Identities = 21/64 (32%), Positives = 27/64 (41%)
Frame = +3
Query: 592 ILPPYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHN 651
+ PP+ RR P RP +R S+++ KR H C RC LGHN
Sbjct: 129 VTPPFTRRPPGRPATKRYV------------------SQNIVKRELH---CSRCKGLGHN 245
Query: 652 VRTC 655
TC
Sbjct: 246 KSTC 257
>TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (12%)
Length = 588
Score = 35.4 bits (80), Expect = 0.037
Identities = 26/101 (25%), Positives = 37/101 (35%), Gaps = 10/101 (9%)
Frame = +3
Query: 565 STFLDTYNNLILPSNGPKLWPQV----------DLPPILPPYVRRAPSRPKKQRKKGNDE 614
+T+ TY+ I P LW ++ D I PP R P RP+K+R + D
Sbjct: 21 ATYRKTYSQTIHPIPDKSLWKELSEGDENAAKADQVLINPPKSLRPPGRPRKKRVRAEDR 200
Query: 615 KVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTC 655
R + + C RC + GH TC
Sbjct: 201 G-------------------RVKRVVHCSRCNQTGHFRTTC 266
>BP036178
Length = 561
Score = 34.3 bits (77), Expect = 0.082
Identities = 22/64 (34%), Positives = 29/64 (44%)
Frame = -2
Query: 592 ILPPYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHN 651
I PP RR P RPKK KV ++ KR + ++CGRC LGH+
Sbjct: 452 IRPPKTRRPPGRPKK--------KVLRVENF-----------KRPKRIVQCGRCHMLGHS 330
Query: 652 VRTC 655
+ C
Sbjct: 329 QKKC 318
>TC17953 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;}, partial (6%)
Length = 527
Score = 33.1 bits (74), Expect = 0.18
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 592 ILPPYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHN 651
+ PP +R P RPK + + D + L+C +C ELGHN
Sbjct: 36 VTPPPTKRPPGRPKMKPVESID---------------------MIKRQLQCSKCKELGHN 152
Query: 652 VRTC 655
+TC
Sbjct: 153 KKTC 164
>TC14876 weakly similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein
(At2g41330/F13H10.12), partial (18%)
Length = 822
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/92 (28%), Positives = 35/92 (37%)
Frame = -3
Query: 688 HMYLTCIMHIPNQSNCSATSSTTCTQEERAS*QERTKQKGWEIIWNHTHNCTNSFNHNRS 747
H +L I +++ S TSS T Q + Q W+ NH+H N+ S
Sbjct: 418 HQHLKHITSCNGKNSNSYTSSVTILQTPK---QSINSTNNWDTEANHSHYTPNT----SS 260
Query: 748 ITWKHNCTTSCKHHFTTT*HHCTTTCCNQHCA 779
T H+ T SC H CN H A
Sbjct: 259 TTLHHHQTLSCSH-------------CNSHTA 203
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/63 (31%), Positives = 25/63 (38%)
Frame = +1
Query: 609 KKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTCYGKQLGDRMLAPG 668
K G ++ H+ G G R LKC CGE GH R C + G R L G
Sbjct: 73 KNGWRVELSHNSKGGGGGRGGGR--GRGGEDLKCYECGEPGHFARECRSRG-GSRGLGSG 243
Query: 669 ENQ 671
+
Sbjct: 244 RRR 252
>BP049972
Length = 496
Score = 30.8 bits (68), Expect = 0.90
Identities = 25/117 (21%), Positives = 39/117 (32%), Gaps = 19/117 (16%)
Frame = -1
Query: 558 TFTLYRKSTFLDTYNNLILPSNGPKLWPQVDLPP-------------------ILPPYVR 598
T + + +T+ TY+ I P W ++ + I PP
Sbjct: 487 TESCFTVATYRKTYSQTIHPIPDRSFWNELSIEDANANKAVEDANASQSIEIVINPPKSL 308
Query: 599 RAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTC 655
R P RP+K+R + D R + + C RC + GH TC
Sbjct: 307 RPPGRPRKKRVRAEDRG-------------------RVKRVVHCSRCNQTGHFRTTC 194
>BP058388
Length = 352
Score = 30.0 bits (66), Expect = 1.5
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 728 WEIIWNHTHNCTNSFNHNRSITWKHNCTTSCK 759
W ++WN N +++NH+ + W+++ + + K
Sbjct: 311 WNVVWNICSNRNSNYNHH*KLXWENHGSDNSK 216
>AV420911
Length = 418
Score = 30.0 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 609 KKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTC 655
K G ++ H+ G G R LKC CGE GH R C
Sbjct: 281 KNGWRVELSHNSKGGGGGRGGGR--GRGGEDLKCYECGEPGHFAREC 415
>TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
{Arabidopsis thaliana;}, partial (7%)
Length = 721
Score = 30.0 bits (66), Expect = 1.5
Identities = 16/62 (25%), Positives = 24/62 (37%)
Frame = -2
Query: 736 HNCTNSFNHNRSITWKHNCTTSCKHHFTTT*HHCTTTCCNQHCATCKQQCANCKQHCATC 795
H+C F+H++ H+ + C + HC CCN C C A C
Sbjct: 291 HDCCWEFHHHQH---HHHLSLFCVAFWCLQR*HCYCCCCNCCCCCCWGHSFGQMNFVARC 121
Query: 796 KQ 797
K+
Sbjct: 120 KR 115
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (49%)
Frame = +1
Query: 734 HTHNCTNSFNHNRSITWKHNCTTSCKHHFTTT*HHCTTTCCNQH 777
H H T+ +H RS+T CTT HH T + CTT + H
Sbjct: 160 HHHRFTHHLHHTRSLT---QCTTLHLHH-TRSHTQCTTLHHHHH 279
>TC8825 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specific fungal
endoglucanase inhibitor protein precursor, partial (49%)
Length = 882
Score = 29.3 bits (64), Expect = 2.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 712 TQEERAS*QERTKQKGWEIIWNHTHNCTNSFNHNRSITWKH--NCTTSCKHHFTTT*HHC 769
T + R S* ++ GW +WN N +HN W+H C H F HHC
Sbjct: 507 THK*RGS*AQKQPW*GWFHLWN*QRQHLNECHHN----WRHQ*QCCLVNGHRFC---HHC 349
>TC9034
Length = 583
Score = 28.9 bits (63), Expect = 3.4
Identities = 17/61 (27%), Positives = 23/61 (36%)
Frame = +1
Query: 595 PYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRT 654
P ++R P + RK+G E S R H +KC C E GH+
Sbjct: 43 PTLKRLPGWERINRKRGVTEGPTVSHEA------------RRSHRVKCANCEEFGHDSWE 186
Query: 655 C 655
C
Sbjct: 187 C 189
>AV406674
Length = 397
Score = 28.9 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 14/31 (44%), Gaps = 1/31 (3%)
Frame = +3
Query: 781 CKQQCAN-CKQHCATCKQLCANCEATNSGGK 810
C C N CK CATCK +C E K
Sbjct: 216 CPASCPNKCKVDCATCKPICVPKEKARCKNK 308
>TC8037 similar to UP|AAR14273 (AAR14273) Predicted protein, partial (5%)
Length = 895
Score = 28.9 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +3
Query: 106 RIKKLKDACKERWGVMLSSYQLYRAKKKALEL 137
R KKLK +C W + LSS +L+ K K + L
Sbjct: 777 RKKKLKASC*ANWSICLSSSELFGFKGKFVSL 872
>AV772111
Length = 423
Score = 28.5 bits (62), Expect = 4.5
Identities = 17/55 (30%), Positives = 22/55 (39%), Gaps = 6/55 (10%)
Frame = -3
Query: 754 CTTSCKHHFTTT*HHCTTTCCNQHCATCKQQCA---NCKQH-C-ATC-KQLCANC 802
C C+ H C CC+ C C + C CK H C + C + CA C
Sbjct: 358 CDRKCQTMRDCGRHACKRRCCDGDCPPCAEICGRRLRCKSHKCPSPCHRGACAPC 194
>AV415462
Length = 418
Score = 28.5 bits (62), Expect = 4.5
Identities = 10/28 (35%), Positives = 13/28 (45%)
Frame = +2
Query: 734 HTHNCTNSFNHNRSITWKHNCTTSCKHH 761
H C S +H R + W H + C HH
Sbjct: 140 HVRPCQRSVHHRRLVLWIHVRSRRCWHH 223
>TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber hypocotyls
(Arabinogalactan protein), partial (26%)
Length = 795
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/87 (22%), Positives = 31/87 (34%)
Frame = +1
Query: 734 HTHNCTNSFNHNRSITWKHNCTTSCKHHFTTT*HHCTTTCCNQHCATCKQQCANCKQHCA 793
H C + +H+ H C S +TTCC C Q + +
Sbjct: 208 HNTRCISFNSHSSCSGDDHTCDASDLTAAGGCSGCLSTTCC------CSSQLTSSQISTC 369
Query: 794 TCKQLCANCEATNSGGKHTHGA*EVQE 820
TC C+ C A + G+*+ +E
Sbjct: 370 TCSYSCSRCSACHHPRGSCSGS*QDEE 450
>TC14735 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {Arabidopsis
thaliana;}, partial (28%)
Length = 617
Score = 28.5 bits (62), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 743 NHNRSITWKHNCTTSCKHHFTTT*HHCTTTCCNQH 777
N N + W+ T CKH TTT* CC +H
Sbjct: 418 NKNWVVQWEMPSFTVCKHSMTTT*-----GCCKRH 329
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.344 0.151 0.515
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,394,470
Number of Sequences: 28460
Number of extensions: 306165
Number of successful extensions: 3746
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of query: 820
length of database: 4,897,600
effective HSP length: 98
effective length of query: 722
effective length of database: 2,108,520
effective search space: 1522351440
effective search space used: 1522351440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC145513.11