BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145513.1 - phase: 0 /pseudo
(902 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (... 161 4e-40
AV409408 135 4e-32
AV406755 125 2e-29
AV779547 108 3e-24
CB828263 102 3e-22
AV410283 96 3e-20
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 95 6e-20
BP045440 94 1e-19
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 88 5e-18
BP064315 78 5e-15
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 76 3e-14
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr... 73 2e-13
BP065014 72 5e-13
TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance ... 64 8e-11
AV406565 54 1e-07
AV427118 53 2e-07
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 51 9e-07
AV770426 51 9e-07
BP065724 48 8e-06
AV408271 47 1e-05
>TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (28%)
Length = 918
Score = 161 bits (408), Expect = 4e-40
Identities = 86/202 (42%), Positives = 133/202 (65%)
Frame = +1
Query: 331 DFIYEAEGLNASESLELFCGHAFRKVIPTEDFLILSRYVVAYCGGIPLALEVLGSYLLKR 390
D IYE + ++ +SL+LF +AF++ P E ++ LS+ +++Y GIPLAL+VLG +L R
Sbjct: 4 DEIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYGR 183
Query: 391 RKQEWQSVLSKLEKIPNDQIHEKLKISFNGLSDRMEKDIFLDVCCFFIGKDRAYVTKILN 450
++ W+S L KLEK+P+ +I LK+S++GL D +KDIFLD+ CF++G V + L+
Sbjct: 184 ERKAWESQLVKLEKLPDPEIINVLKLSYDGLDDD-QKDIFLDIACFYLGHLEESVAQTLD 360
Query: 451 GCGLHADIGITVLIERSLIKVEKNKKLGMHDLLRDMGREIVRESSPEEPEKRTRLWCHED 510
CG ADIG+ VL +R LI + + ++ MHDL+ MG+EIVR+ P +P KR+RLW +
Sbjct: 361 SCGFFADIGMEVLKDRCLISILEG-RIVMHDLIEVMGKEIVRQQCPNDPGKRSRLWNDDQ 537
Query: 511 VVNVLEDHTTTN*DFLFILFFY 532
+VL + T D + +F Y
Sbjct: 538 TYDVLGKNKGT--DAIQCIFLY 597
>AV409408
Length = 430
Score = 135 bits (339), Expect = 4e-32
Identities = 68/142 (47%), Positives = 96/142 (66%)
Frame = +2
Query: 374 GGIPLALEVLGSYLLKRRKQEWQSVLSKLEKIPNDQIHEKLKISFNGLSDRMEKDIFLDV 433
GG+PLALEVLGS+L R +W+ L K++K+P+D I KL+IS++ L D K +FLD+
Sbjct: 2 GGLPLALEVLGSFLCGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDE-HKTLFLDI 178
Query: 434 CCFFIGKDRAYVTKILNGCGLHADIGITVLIERSLIKVEKNKKLGMHDLLRDMGREIVRE 493
CFF G + V ++L CGLH +GI VLIE+SL+ + + +GMHDLL +MG+ V
Sbjct: 179 ACFFKGWYKHKVIQLLGSCGLHPTVGINVLIEKSLLTFD-GRVIGMHDLLEEMGKTEVFL 355
Query: 494 SSPEEPEKRTRLWCHEDVVNVL 515
SP +P +R+RLW ED+ VL
Sbjct: 356 ESPNDPGRRSRLWSLEDIDQVL 421
>AV406755
Length = 425
Score = 125 bits (315), Expect = 2e-29
Identities = 55/111 (49%), Positives = 87/111 (77%)
Frame = +3
Query: 7 RSRPQWIHDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEELGPELVRAIQ 66
+ + +W +DVF++FRG+++R++F SHLY AL +AGI F+D+E L++GE++ L++AI+
Sbjct: 63 KPKSKWSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMDNE-LQRGEDISSSLLKAIE 239
Query: 67 GSQIAIVVFSKNYVNSSWCLNELEQIMKCKADNGQVVMPVFNGITPSNIRQ 117
S+IAI++FS NY S WCL+ELE+I++C+ GQ VMPVF + PS+IR+
Sbjct: 240 DSRIAIIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRK 392
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = +3
Query: 474 NKKLGMHDLLRDMGREIV 491
N KL MHDLL++MGR I+
Sbjct: 3 NNKLQMHDLLKEMGRGII 56
>AV779547
Length = 556
Score = 108 bits (271), Expect = 3e-24
Identities = 60/143 (41%), Positives = 86/143 (59%), Gaps = 9/143 (6%)
Frame = +1
Query: 18 INFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEELGPELVRAIQGSQIAIVVFSK 77
++FRG+DTR F HL AL G TF DD L+KG+ + EL++AI+GSQI IVVFSK
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 78 NYVNSSWCLNELEQIMKCKADNGQVVMPVFNGITPSNIRQHS----PVILVDELD----- 128
Y +S+WCL EL +I Q V+PV +TPS +R+ S L E
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKEDL 468
Query: 129 QIIFGKKRALRDVSYLTGWDMSN 151
+++ ++AL +V+ L+GWD++N
Sbjct: 469 EMVQRWRKALAEVADLSGWDVTN 537
>CB828263
Length = 570
Score = 102 bits (254), Expect = 3e-22
Identities = 49/131 (37%), Positives = 90/131 (68%), Gaps = 5/131 (3%)
Frame = +2
Query: 50 NLKKGEELGPELVRAIQGSQIAIVVFSKNYVNSSWCLNELEQIMKCKADNGQVVMPVFNG 109
+L++G+E+ L+RAI+ ++++++VFSKNY NS WCL+EL +I++CK GQ+V+PVF
Sbjct: 5 DLQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYD 184
Query: 110 ITPSNIRQHS-----PVILVDELDQIIFGKKRALRDVSYLTGWDMSNYSNQSKVVKEIVS 164
I PS++R + + ++D++ ++ ALR+ + L+GWD S +S+V+++I
Sbjct: 185 IDPSHVRNQTGTYAEAFVKHGQVDKVQKWRE-ALREAANLSGWDCSVNRMESEVIEKIAK 361
Query: 165 QVLKNLDKKYL 175
VL+ L++ Y+
Sbjct: 362 DVLEKLNRVYV 394
>AV410283
Length = 426
Score = 95.5 bits (236), Expect = 3e-20
Identities = 55/140 (39%), Positives = 80/140 (56%), Gaps = 1/140 (0%)
Frame = +1
Query: 253 QEQLLSDILKTRKIKVLSVEQGKAMIKQRLRSKRILAVLDDVSELEQFNALCEGNS-VGP 311
Q ++L D+ + V G + IK+ L+ ++L +LDDV E++Q + L
Sbjct: 1 QNRILGDLSSGGTVN--DVNDGVSAIKRVLQGNKVLLILDDVDEIQQLDFLMGNREWFHK 174
Query: 312 GSVIIITTRDLRVLNILEVDFIYEAEGLNASESLELFCGHAFRKVIPTEDFLILSRYVVA 371
GS ++ITTR+ +VL VD YE L S +L LFC HA R+ P E F LS+ +V
Sbjct: 175 GSRVVITTRNTQVLPESYVDMFYEVRELELSAALALFCHHAMRRKKPAEGFSNLSKQIVK 354
Query: 372 YCGGIPLALEVLGSYLLKRR 391
GG+PLALEV+GS+L +R
Sbjct: 355 KTGGLPLALEVIGSFLFDKR 414
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 94.7 bits (234), Expect = 6e-20
Identities = 45/65 (69%), Positives = 54/65 (82%)
Frame = -2
Query: 1 MSSSSSRSRPQWIHDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEELGPE 60
+S SSS S QWI+DVFINFRGKDTR +FVSHLY AL++AG+N FLDDENL++G EL PE
Sbjct: 241 ISMSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPE 62
Query: 61 LVRAI 65
L + I
Sbjct: 61 LQKLI 47
>BP045440
Length = 535
Score = 94.0 bits (232), Expect = 1e-19
Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 10/145 (6%)
Frame = -3
Query: 14 HDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEELGPELVRAIQGSQIAIV 73
+ +FI+FRG DTR F LY L G TF DDE+L+ G + +L+ I+ S+ AI+
Sbjct: 527 YQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAII 351
Query: 74 VFSKNYVNSSWCLNELEQIMKCKADNG--QVVMPVFNGITPSNIR----QHSPVILVDEL 127
+ SKNY S WCL EL +I++CK G Q+V+P +TP+ +R +++ + E
Sbjct: 350 ILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHEK 171
Query: 128 DQI----IFGKKRALRDVSYLTGWD 148
+ I I K+AL DV LTG++
Sbjct: 170 NGIDSKTIQAWKKALFDVCTLTGFE 96
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 88.2 bits (217), Expect = 5e-18
Identities = 46/105 (43%), Positives = 69/105 (64%)
Frame = +1
Query: 12 WIHDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEELGPELVRAIQGSQIA 71
+I+DVFI+ DTR F LY AL+D GI TF+DD + + + +AI+ S+IA
Sbjct: 97 FIYDVFISLITSDTRFGFSGDLYTALSDKGILTFIDDGLPRPDDIMSTVNSKAIESSRIA 276
Query: 72 IVVFSKNYVNSSWCLNELEQIMKCKADNGQVVMPVFNGITPSNIR 116
IVV S+NY +SS+CL+EL I+K + + G ++ PVF + PS++R
Sbjct: 277 IVVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVR 411
>BP064315
Length = 350
Score = 78.2 bits (191), Expect = 5e-15
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Frame = +1
Query: 270 SVEQGKAMIKQRLRSKRILAVLDDVSELEQFNALCEGNS-VGPGSVIIITTRDLRVLNIL 328
S +G IK+RL +KR+L VLDDV +++Q AL G G GS IIITTRD +L+
Sbjct: 31 STFRGDFEIKRRLSNKRVLLVLDDVDKIKQLQALAGGGDWFGSGSRIIITTRDTTMLDKH 210
Query: 329 EVDFI----YEAEGLNASESLELFCGHAFRKVIPTEDFLILSRYVV 370
++D + Y+ E LN +SLELFC HAF P E+F +S + V
Sbjct: 211 KMDDVIMKKYKMEELNDHDSLELFCWHAFNMSTPAENFEGVSSHAV 348
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 75.9 bits (185), Expect = 3e-14
Identities = 36/83 (43%), Positives = 54/83 (64%)
Frame = +1
Query: 33 LYAALTDAGINTFLDDENLKKGEELGPELVRAIQGSQIAIVVFSKNYVNSSWCLNELEQI 92
LY AL G TF+DDE L G E+ L+ A + S+++I+VFS+NY SSWCL+EL +I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 93 MKCKADNGQVVMPVFNGITPSNI 115
++C Q+V P+F + S++
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDV 249
>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
complete
Length = 880
Score = 73.2 bits (178), Expect = 2e-13
Identities = 66/231 (28%), Positives = 111/231 (47%), Gaps = 14/231 (6%)
Frame = +3
Query: 182 VGLKPRAEKPIRFLRQNTRKVCLVGIWGMGGIGKSTIAKVIYND--LCYEFEDQSFVANI 239
VG+ R +K + L + ++ + GMGG+GK+T+ K +Y+D + F +++ +
Sbjct: 198 VGIDRRKKKLMGCLIKPCPVRKVISVTGMGGMGKTTLVKQVYDDPVVIKHFRACAWIT-V 374
Query: 240 REVWEKDRGRIDLQEQLLSDILKTRKIKV--LSVEQGKAMIKQRLRSKRILAVLDDVSEL 297
+ E DL QL S+I + + + + ++ K +IK L+ +R L V DDV +
Sbjct: 375 SQSCEIGELLRDLARQLFSEIRRPVPLGLENMRCDRLKMIIKDLLQRRRYLVVFDDVWHV 554
Query: 298 EQFNA----LCEGNSVGPGSVIIITTR--DLRVLNILEVDF-IYEAEGLNASESLELFCG 350
++ A L + N GS I+ITTR DL + E +Y + L E+ ELFC
Sbjct: 555 REWEAVKYALPDNNC---GSRIMITTRRSDLAFTSSTESKGKVYNLQPLKEDEAWELFCR 725
Query: 351 HAFRKVIPTEDFLILSRYVVAYCGGIPLALEVLGSYLL---KRRKQEWQSV 398
F + + Y++ C G+PLA+ + L KRR EW +
Sbjct: 726 KTFHGDSCPSHLIGICTYILRKCEGLPLAIVAISGVLATKDKRRIDEWDMI 878
>BP065014
Length = 498
Score = 71.6 bits (174), Expect = 5e-13
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Frame = -2
Query: 45 FLDDENLKKGEELGPELVRAIQGSQIAIVVFSKNYVNSSWCLNELEQIMKCKADNGQVVM 104
F DD +L+ G + EL+ AI+ S++AIVV S+N+ +S WCL EL +I+ C+ +V+
Sbjct: 497 FKDDLSLEDGAPI-EELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 105 PVFNGITPSNIR-----------QHSPVILVDELDQIIFGKKRALRDVSYLTGWDMSNYS 153
P+F + P+NIR +H + D Q + +AL D+SYL G Y
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKD--SQTVREWTQALSDISYLKGEPYKGYV 147
Query: 154 NQSKVVKEIVSQVLKNLDKKYL 175
+ + ++ S +L N + Y+
Sbjct: 146 VKLSITFQL-SSILLNSFRMYI 84
>TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance
protein-like, partial (18%)
Length = 688
Score = 64.3 bits (155), Expect = 8e-11
Identities = 54/160 (33%), Positives = 82/160 (50%), Gaps = 9/160 (5%)
Frame = +2
Query: 286 RILAVLDDVSELEQFNALCEGNSVGPGSVIIITTRDL--RVLNILEVDFIYEAEGLNASE 343
+IL VLDDV L L PG ++ +R R+ N Y+ E L+ +
Sbjct: 209 QILVVLDDVWSLPVLEQLVLRV---PGCKYLVVSRFKFQRIFNDT-----YDVELLSEGD 364
Query: 344 SLELFCGHAF-RKVIPTEDFLILSRYVVAYCGGIPLALEVLGSYLLKRRKQEWQSVLSKL 402
+L LFC HAF K IP L + VVA CG +PLAL+V+G+ L + + W SV ++L
Sbjct: 365 ALSLFCHHAFGHKSIPFGANQNLIKQVVAECGRLPLALKVIGASLRDQNEMFWLSVKTRL 544
Query: 403 E------KIPNDQIHEKLKISFNGLSDRMEKDIFLDVCCF 436
+ + +++ IS N L +++ K+ FLD+C F
Sbjct: 545 SQGLSIGESYEVNLIDRMAISTNYLPEKV-KECFLDLCAF 661
>AV406565
Length = 207
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +2
Query: 3 SSSSRSRPQWIHDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEEL 57
S++S S PQ HDVF++FRG+DTR T HL A LT + T++ D +L++G+E+
Sbjct: 44 STTSSSAPQQKHDVFLSFRGEDTRYTCTGHLQATLTRLQVKTYI-DYDLQRGDEI 205
>AV427118
Length = 317
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/63 (39%), Positives = 40/63 (62%)
Frame = +3
Query: 460 ITVLIERSLIKVEKNKKLGMHDLLRDMGREIVRESSPEEPEKRTRLWCHEDVVNVLEDHT 519
I+ L+ + LI + + +L +H+ +R+MG+EIVR S P +RLW +D+ VLED T
Sbjct: 54 ISALVSKFLINISSSGELTLHEWMRNMGKEIVRRKSSRMPCVSSRLWILQDIRQVLEDCT 233
Query: 520 TTN 522
T+
Sbjct: 234 GTH 242
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 50.8 bits (120), Expect = 9e-07
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = +3
Query: 195 LRQNTRKVCLVGIWGMGGIGKSTIAKVIYNDLCYEFEDQSFVANIREVWEKDRGRIDLQE 254
L Q ++ V ++GIWGMGGIGK+TIA+ I+N ++E F++ +++ K G L+E
Sbjct: 588 LCQESKDVRVIGIWGMGGIGKTTIAEEIFNRRHSQYEGICFLSKVKDEL*K-HGMQSLRE 764
Query: 255 QLLSDIL 261
+L S +L
Sbjct: 765 KLFSTLL 785
>AV770426
Length = 517
Score = 50.8 bits (120), Expect = 9e-07
Identities = 30/67 (44%), Positives = 40/67 (58%)
Frame = +1
Query: 712 FLVVQRLTNWKKI*CKWNP*QL*WQQILESNNHHFR**DQKALDIYLYVDMKDYHIMFFL 771
F VQ+ T WK+ C+W+ *Q+* Q L S+ **D K ++ L V MKDY +M+FL
Sbjct: 76 FPAVQK*TRWKRTSCRWSH*QI*RQMTLLSHRFPIL**D*KISNMCLCVAMKDYQVMYFL 255
Query: 772 LSLGLGC 778
L L C
Sbjct: 256 L*FCL*C 276
>BP065724
Length = 495
Score = 47.8 bits (112), Expect = 8e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -1
Query: 79 YVNSSWCLNELEQIMKCKADNGQVVMPVFNGITPSNIR 116
Y +SSWCL E+ +I++CK N Q+V P+F + PS++R
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVR 382
>AV408271
Length = 409
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 14 HDVFINFRGKDTRKTFVSHLYAALTDAGINTFLDDENLKKGEEL 57
+DVF++FRG+D R F+SHL A IN F+DD+ LK+G+E+
Sbjct: 280 YDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDK-LKRGQEI 408
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.345 0.153 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,624,573
Number of Sequences: 28460
Number of extensions: 215044
Number of successful extensions: 1864
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of query: 902
length of database: 4,897,600
effective HSP length: 98
effective length of query: 804
effective length of database: 2,108,520
effective search space: 1695250080
effective search space used: 1695250080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC145513.1