TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145512.4 + phase: 0 /pseudo
         (135 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    52  5e-08
TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial...    28  0.41
TC8167 similar to PIR|JC7519|JC7519 subtilisin-like serine prote...    25  6.0
AW163993                                                               24  7.8

>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 23/45 (51%), Positives = 34/45 (75%)
 Frame = +2

Query: 47  PTLDSVEHVNEFMMSLIPGEEKEYLTSNSIFRSGENSDV*SEWFT 91
           PTL+SVE VNEFM+ L+PG   EYL+S++  +  E++++ S WFT
Sbjct: 458 PTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WFT 592


>TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial (41%)
          Length = 1046

 Score = 28.5 bits (62), Expect = 0.41
 Identities = 13/39 (33%), Positives = 20/39 (50%)
 Frame = -2

Query: 57   EFMMSLIPGEEKEYLTSNSIFRSGENSDV*SEWFTPEFL 95
            ++ +S I  E K YL   +IFR      V + W +PE +
Sbjct: 1045 KYNLSFIERENKSYLHHKNIFRLTHKGHVSNIWLSPEII 929


>TC8167 similar to PIR|JC7519|JC7519 subtilisin-like serine proteinase  -    
                       Arabidopsis thaliana {Arabidopsis thaliana;} ,
            partial (65%)
          Length = 2760

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -1

Query: 89   WFTPEFLNGIKSSGIPNHRLKLK 111
            +FTP F + + SS IPN + K K
Sbjct: 2634 FFTPSFQSQLCSSNIPNKKEKKK 2566


>AW163993 
          Length = 438

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 66  EEKEYLTSNSIFRSGENSDV*SEWFTPEFLNGIKSSGIPNHRLKLKVG 113
           EEK   ++NS+   G NS             G  SSG+ +  L +K G
Sbjct: 321 EEKNVASANSVLDKGSNS------------GGAPSSGLASTWLNMKTG 428


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,202,685
Number of Sequences: 28460
Number of extensions: 25825
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 135
length of database: 4,897,600
effective HSP length: 81
effective length of query: 54
effective length of database: 2,592,340
effective search space: 139986360
effective search space used: 139986360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)