TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145331.13 + phase: 0 /partial
         (365 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10436 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial...   259  5e-70
TC15550 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial...   202  6e-53
TC17025 similar to UP|Q9ZST2 (Q9ZST2) Pyrophosphate-dependent ph...    31  0.29
TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription in...    27  5.4
TC16413 similar to GB|AAF63224.1|7532410|AC002329 3-hydroxy-3-me...    27  7.1

>TC10436 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial (30%)
          Length = 628

 Score =  259 bits (662), Expect = 5e-70
 Identities = 129/153 (84%), Positives = 139/153 (90%), Gaps = 4/153 (2%)
 Frame = +3

Query: 1   DLIKPQNVKLSPIKCSIKS----SQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTA 56
           DL K Q V    +KCSIKS    SQ  VRVGVLGASGYTG+E+LRLLANHP+FGVAL+TA
Sbjct: 180 DLRKQQRV----VKCSIKSGHATSQKTVRVGVLGASGYTGAEVLRLLANHPEFGVALLTA 347

Query: 57  DRKAGQAISSVFPHLGTQDLPDLIAIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIV 116
           DRKAGQ+ISSVFPHLG QDLPDLIAIKDANFSDVDAVFCCLPHGTTQ+IIKGLPKHLK+V
Sbjct: 348 DRKAGQSISSVFPHLGPQDLPDLIAIKDANFSDVDAVFCCLPHGTTQDIIKGLPKHLKMV 527

Query: 117 DLSADFRLRDVSEYEEWYGQPHRAPDLQKEAIY 149
           DLSADFRLRD+SEYEEWYGQPH+APDLQKEAIY
Sbjct: 528 DLSADFRLRDISEYEEWYGQPHKAPDLQKEAIY 626


>TC15550 similar to UP|Q93Z70 (Q93Z70) At2g19940/F6F22.3, partial (27%)
          Length = 617

 Score =  202 bits (515), Expect = 6e-53
 Identities = 101/110 (91%), Positives = 105/110 (94%)
 Frame = +1

Query: 256 IPMSRGMQSTIYVEMAPGVRIDDLRHQLQLSYEDEEFVVLLENGVIPRTHSVKGSNYCLF 315
           IPMSRGMQSTIYVEMAPGVRI+DL  QL+LSYEDE+FVVLLE GVIPRTHSVKGSNYCL 
Sbjct: 1   IPMSRGMQSTIYVEMAPGVRIEDLYEQLKLSYEDEKFVVLLEKGVIPRTHSVKGSNYCLI 180

Query: 316 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLIMGFPENLGLQYLPLF 365
           NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLIMGFPE+LGL YLPLF
Sbjct: 181 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLIMGFPEDLGLHYLPLF 330


>TC17025 similar to UP|Q9ZST2 (Q9ZST2) Pyrophosphate-dependent
           phosphofructokinase alpha subunit  , partial (31%)
          Length = 649

 Score = 31.2 bits (69), Expect = 0.29
 Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
 Frame = +3

Query: 48  QFGVALMTADRKAGQAISSVFPHL----------GTQDLPDLIAIKDANFSDVDAVFCCL 97
           +FG A  TAD     AIS  FPH            T  +PD   I +     V  VFC  
Sbjct: 183 EFGDATTTADPSDAPAISRAFPHTYGHPLAHFLRATAKVPDAQIITEHPPMRVGIVFCGR 362

Query: 98  PHGTTQEIIKGLPKHLKI 115
                  +I GL   LKI
Sbjct: 363 QSPGGHNVIWGLHTALKI 416


>TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription initiation
           factor TFIID subunit 5 (TBP-associated factor 5)
           (TBP-associated factor 90 kDa) (TAFII-90), partial (4%)
          Length = 530

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 165 VANPGCYPTSIQLPLVPLIKANLIQTTNII 194
           V++    PT +QLPL+PL+   L Q   I+
Sbjct: 159 VSSQWTVPTLLQLPLIPLLGFGLCQLVKIL 248


>TC16413 similar to GB|AAF63224.1|7532410|AC002329
           3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
           {Arabidopsis thaliana;}, partial (41%)
          Length = 674

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 18/59 (30%), Positives = 29/59 (48%)
 Frame = +3

Query: 13  IKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKAGQAISSVFPHL 71
           ++ SI S+  ++ +G L  SG+T   I    A+H  F    +T+  K    I+ V P L
Sbjct: 264 VRASISSAARSMALGTLSHSGWTRKFIRVRFASH-TFPAKTLTSSAKTLFGIALVSPPL 437


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,535,853
Number of Sequences: 28460
Number of extensions: 64756
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of query: 365
length of database: 4,897,600
effective HSP length: 91
effective length of query: 274
effective length of database: 2,307,740
effective search space: 632320760
effective search space used: 632320760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)