TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145330.4 + phase: 0 
         (257 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV424928                                                              260  1e-70
TC18177 similar to UP|Q8LIG3 (Q8LIG3) OJ1200_C08.22 protein, par...   148  1e-36
AV411101                                                               28  1.6
TC12113 weakly similar to GB|CAD40580.1|21741678|OSJN00141 oj000...    27  4.5
TC14796                                                                26  5.9
BP078780                                                               26  5.9
TC16749 similar to UP|O22855 (O22855) At2g43410 protein, partial...    26  5.9
TC7949                                                                 26  7.7
TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break re...    26  7.7

>AV424928 
          Length = 420

 Score =  260 bits (665), Expect = 1e-70
 Identities = 122/129 (94%), Positives = 125/129 (96%)
 Frame = +1

Query: 1   MEGENGRKLKILCLHGFRTSGSFIKKQISKWDPSIFSQFHLEFPDGKFPAGGKSDIEGIF 60
           MEGENGRKLKILCLHGFRTSGSF+KKQISKWDPSIFSQF LEFPDGKFPAGGKSDIEGIF
Sbjct: 34  MEGENGRKLKILCLHGFRTSGSFLKKQISKWDPSIFSQFDLEFPDGKFPAGGKSDIEGIF 213

Query: 61  PPPYFEWFQFDKDFTVYTNLDECISYLTEYIIANGPFDGFLGFSQGATLSALLIGYQAQG 120
           PPPYFEWFQF+K+FT YTNLDECISYL EYI ANGPFDGFLGFSQGATLSALLIGYQAQG
Sbjct: 214 PPPYFEWFQFNKEFTEYTNLDECISYLCEYITANGPFDGFLGFSQGATLSALLIGYQAQG 393

Query: 121 KLLKEHPPI 129
           KLLKEHPPI
Sbjct: 394 KLLKEHPPI 420


>TC18177 similar to UP|Q8LIG3 (Q8LIG3) OJ1200_C08.22 protein, partial (22%)
          Length = 642

 Score =  148 bits (373), Expect = 1e-36
 Identities = 81/117 (69%), Positives = 89/117 (75%), Gaps = 17/117 (14%)
 Frame = +1

Query: 158 SVHFIGEKDWLKIPSEELASAFDKPLIIRHPQGHTVPRLDEVSTGQLQNFVAEIL----- 212
           SVHFIGEKDWLK+PSEELASAF K L+IRHPQGHTVPRLDEVSTGQL+++VA IL     
Sbjct: 1   SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVSTGQLRDWVAGILGEPKD 180

Query: 213 SQPKVGVSICEHE------------SKVEVDGTNGDKGVNGVEINQGNAETVEVVQA 257
            +PK GV I EHE            SKVEV+ TNGDK VNGVEIN+G AETVEV QA
Sbjct: 181 GEPKDGVPIGEHETRHEEKKSEEKGSKVEVNSTNGDKEVNGVEINKGGAETVEVAQA 351


>AV411101 
          Length = 369

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = -2

Query: 13  CLHGFRTSGSFIKKQISKW 31
           C HGF + G  IKK I+KW
Sbjct: 137 CNHGFTSPGRPIKKHITKW 81


>TC12113 weakly similar to GB|CAD40580.1|21741678|OSJN00141 oj000126_13.2
           {Oryza sativa (japonica cultivar-group);} , partial
           (40%)
          Length = 484

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 TLSALLIGYQAQGKLLKEHPPIKFLVSISGSKF 140
           T S+  I Y+   K  K H  +K + S+SGSK+
Sbjct: 478 TDSSFKINYKRVSKHAKNHMLVKSIYSLSGSKY 380


>TC14796 
          Length = 627

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 48  FPAGGKSDIEGIFPPPYFEWFQFDKD 73
           +  GG+S + G+    Y  WF+F KD
Sbjct: 205 YSLGGRSKVAGMKGEVYGRWFEFYKD 282


>BP078780 
          Length = 516

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 201 TGQLQNFVAEILSQPKVGV 219
           TGQL N +  +LSQP+ GV
Sbjct: 399 TGQLDNNLYHVLSQPRCGV 455


>TC16749 similar to UP|O22855 (O22855) At2g43410 protein, partial (4%)
          Length = 585

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 44  PDGKFPAGGKSDIEGIFPP 62
           PDG  PAGG  +++  FPP
Sbjct: 464 PDGANPAGGSLNVKPPFPP 520


>TC7949 
          Length = 1183

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 233 TNGDKGVNGVEINQGNAETVEVVQA 257
           TNGD   +G E N+  A  VEVV A
Sbjct: 777 TNGDAVASGAEGNKSRAPDVEVVVA 703


>TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break repair
           protein MRE11, partial (23%)
          Length = 805

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/41 (26%), Positives = 22/41 (52%)
 Frame = -1

Query: 3   GENGRKLKILCLHGFRTSGSFIKKQISKWDPSIFSQFHLEF 43
           GE  +++ +   +  +  GS+  K I++W  S F+ F+  F
Sbjct: 274 GEGTQEVAVTSEYTLKNFGSYSVKIITEWKKSFFAFFYSNF 152


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,591,799
Number of Sequences: 28460
Number of extensions: 66141
Number of successful extensions: 250
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of query: 257
length of database: 4,897,600
effective HSP length: 88
effective length of query: 169
effective length of database: 2,393,120
effective search space: 404437280
effective search space used: 404437280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)