BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145330.14 - phase: 0
(1199 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 164 6e-41
BP075943 140 9e-34
BP066094 115 1e-28
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 95 6e-20
AV424544 92 5e-19
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 91 1e-18
BP084332 88 9e-18
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 85 6e-17
AV766665 82 7e-16
BP043850 79 3e-15
BP057233 73 2e-13
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 69 3e-12
AV410378 57 2e-08
AV409763 55 5e-08
TC11361 54 1e-07
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 51 1e-06
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 50 2e-06
AV411594 50 3e-06
AV777635 48 1e-05
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 39 0.005
>AV780009
Length = 529
Score = 164 bits (416), Expect = 6e-41
Identities = 74/163 (45%), Positives = 115/163 (70%)
Frame = -1
Query: 1014 EAVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTW 1073
+A R+LRY+K P +GL+F + + ++D+DWAG R+S TGY ++ +L++W
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1074 RSKKQGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHN 1133
R+KKQ V+RSS+EAE+RA+A +CE+ W+ L + LKL + LP+ LFCD+++A+ IAHN
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1134 PVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTK 1176
P H+RTKHIE+D H ++ K+ +G I L ++++ Q ADI TK
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP075943
Length = 547
Score = 140 bits (354), Expect = 9e-34
Identities = 70/164 (42%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Frame = -3
Query: 872 SNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARSRKGI 931
++ G L++YVDD++L G+D+ E+ +K +L +F IKDLG KYFLG+E+ARS GI
Sbjct: 545 ASSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGI 366
Query: 932 VVSQRKYILDLLEETGMSGCRPADTPMELNAKL--WEKGNVPVDIGRYQRLVGKLIYLAH 989
V++QRKY L L+ ++G G +P N++ G DIG Y+R+VG+L+YL
Sbjct: 365 VLNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNT 186
Query: 990 TRPDIAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGLYF 1033
TRPDI F+V+ +SQF+ +P + H + + L+YL +PG GL++
Sbjct: 185 TRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFY 54
>BP066094
Length = 532
Score = 115 bits (288), Expect(2) = 1e-28
Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Frame = +2
Query: 775 AKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFED-KFGLNVCKLQK 833
+K +R+L+S +VN + L+Q++VK+AFLNG + EEVY+ PPG ED K ++ KL+K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 834 SLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDD 893
SLYGLKQ+PRAW+E+ + + + ++ + D TLF + D I I+ +YVDDII +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSAN 442
Query: 894 IVEMDRLKKNLAKEFEIKDLGALKYFLGME 923
+ + EFE++ +G LKYFLG++
Sbjct: 443 PSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 29.6 bits (65), Expect(2) = 1e-28
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 759 FTQAYGIDYSETFAPVAK 776
++Q GIDY+ETFAPVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 95.1 bits (235), Expect = 6e-20
Identities = 45/97 (46%), Positives = 67/97 (68%)
Frame = +1
Query: 1102 WIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICL 1161
W+ LL++LK+ + P ++CD+ +A IA NPV H+RTKHIEID H ++E+I G I L
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1162 PYVTSNEQTADILTKSLARPNFERLIVKLGMTNIYAP 1198
++S+E ADI TK+L+ NF ++ KLG+ NI +P
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKLGLINICSP 294
>AV424544
Length = 276
Score = 92.0 bits (227), Expect = 5e-19
Identities = 44/82 (53%), Positives = 60/82 (72%)
Frame = +3
Query: 857 GYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGAL 916
GY+Q+ DH+LF +F D +++VYVDD+IL G+D+ E+ +K L +F IKDLG L
Sbjct: 33 GYIQSAHDHSLFTKF-RDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTL 209
Query: 917 KYFLGMEVARSRKGIVVSQRKY 938
KYFLG+EVARS G+ +SQRKY
Sbjct: 210 KYFLGLEVARSSCGLFLSQRKY 275
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 90.5 bits (223), Expect = 1e-18
Identities = 45/100 (45%), Positives = 67/100 (67%)
Frame = +1
Query: 1098 CELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSG 1157
CEL W+ +L++L++ P L+CDS++A IA N V H+RTKH++ID H ++EK+ +
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1158 TICLPYVTSNEQTADILTKSLARPNFERLIVKLGMTNIYA 1197
L ++S +QTADILTK L F L+ KLG+ NIY+
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYS 300
>BP084332
Length = 368
Score = 87.8 bits (216), Expect = 9e-18
Identities = 42/113 (37%), Positives = 72/113 (63%)
Frame = +2
Query: 1078 QGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQH 1137
Q +A S+AEAE+ + A ++LW++ LE+ ++ ++ + ++CD+ AAIS++ NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILH 208
Query: 1138 DRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTKSLARPNFERLIVKL 1190
R KHIE+ HFI++ + G + L +V ++ Q ADI TK LA F ++ L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 85.1 bits (209), Expect = 6e-17
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Frame = +2
Query: 846 FEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLA 905
F+ F S+ GY + SDH + + +D IL++YVDD+++ G + + LK LA
Sbjct: 2 FDSFIMSL---GYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLA 172
Query: 906 KEFEIKDLGALKYFLGMEVARSRKG--IVVSQRKYILDLLEETGMSGCRPADTPMELNAK 963
+EF++KDLG LGM++ R RK I +SQ+ Y+ +L M C P TP+ +N K
Sbjct: 173 REFDMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYK 352
Query: 964 L------------WEKGNVPVDIGRYQRLVGKLIY 986
L E VP Y VG L+Y
Sbjct: 353 LSSSMIPSSEAERMEMSRVP-----YASAVGSLMY 442
>AV766665
Length = 601
Score = 81.6 bits (200), Expect = 7e-16
Identities = 40/75 (53%), Positives = 52/75 (69%)
Frame = +3
Query: 1018 RILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKK 1077
RI YLK+N +G F+K + FT AD+ GS++DR ST GY ++ GNLVTWRSK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1078 QGVVARSSAEAEFRA 1092
Q ++ARSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
Score = 37.7 bits (86), Expect = 0.011
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +1
Query: 844 AWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKN 903
AWF + T + + + T R ++ + L VYVD + + GDD VE L++
Sbjct: 13 AWFVRLTEATHAESRWPYSLNKTCPQRQTHTS--SHLCVYVDHMTIVGDDEVEKQILREK 186
Query: 904 LAKEFEIKDLGALKYFLGMEV 924
LA +F++K LKY +EV
Sbjct: 187 LAPQFDLK---KLKYISVIEV 240
>BP043850
Length = 515
Score = 79.3 bits (194), Expect = 3e-15
Identities = 41/92 (44%), Positives = 57/92 (61%)
Frame = -1
Query: 1099 ELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGT 1158
E++W++ LL EL P L D+ +AI IA NPV H+ T+HIE+D H ++E
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1159 ICLPYVTSNEQTADILTKSLARPNFERLIVKL 1190
I LP+V+++ Q ADILTKSL R L+ KL
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKL 237
>BP057233
Length = 473
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Frame = -2
Query: 1113 KIDLPLK--LFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQT 1170
K+ +P K L+CD+ +A ++A NPV H R+KHIEID H+I+++++ + + YV + +Q
Sbjct: 472 KLPMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQI 293
Query: 1171 ADILTKSLARPNFERLIVKLGMTNIYAP 1198
AD LTK L+ F +L KLG+ I++P
Sbjct: 292 ADCLTKPLSHTRFSQLRDKLGV--IHSP 215
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/83 (37%), Positives = 57/83 (68%)
Frame = +3
Query: 1098 CELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSG 1157
CE LW+ L +L++ L + ++CD+++A+ +A N V H RT++IEID H + K++ G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1158 TICLPYVTSNEQTADILTKSLAR 1180
+ L +V S++Q AD+ TK++++
Sbjct: 198 ILHLLHVPSSDQVADVFTKTISQ 266
>AV410378
Length = 358
Score = 57.0 bits (136), Expect = 2e-08
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +1
Query: 655 PVRSCTKHPMAKFVSYSNLSSSFAAFTSQLSTVEIPKNVQEALKIPKWKEAVLEEMRALE 714
P + +P++K +SY L+ S+ AF ++TV P EA+K W++A+ +E+ ALE
Sbjct: 136 PSSAGISYPLSKVISYHKLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALE 315
Query: 715 KNKTWKIMTLPAGK 728
+N TW ++ P K
Sbjct: 316 RNHTWILVDKPPDK 357
>AV409763
Length = 426
Score = 55.5 bits (132), Expect = 5e-08
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +2
Query: 99 QRLDGKNYMEWSQTVRLILDGKGKLGFITGEIQMPSTTDPNYRFWKSENSTIIAWLLSTM 158
Q L G NY WS+ +R+ L K KLGF+ I +P DP + W+ N+ + +W+L+++
Sbjct: 227 QVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPWQRNNNIVASWILNSV 406
Query: 159 ESTI 162
+
Sbjct: 407 SKDL 418
>TC11361
Length = 549
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/72 (38%), Positives = 42/72 (57%), Gaps = 1/72 (1%)
Frame = +3
Query: 320 KPFCDHCNRQWHTRDTCWKLHGKPPNWKKKGGKEGRALQATTSDQEHQSSSSSF-PFTKE 378
+P C HC HT+D C++L G PP++KK K ++ A T+ E S++SF PFT +
Sbjct: 33 RPTCTHCGILGHTKDKCYRLIGFPPHYKK--SKSVASVNAVTTGTEDSPSANSFVPFTAQ 206
Query: 379 QLDQLYKMFGSQ 390
Q L +M +Q
Sbjct: 207 QCQVLLQMLQTQ 242
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 53 GSTTTGSGGSGGGGPG----GGGGPGGGSFGGGGPYGNNDGY 90
G G GG GGGG G GGGG GGG +GGGG YG + GY
Sbjct: 291 GGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGY 416
Score = 50.8 bits (120), Expect = 1e-06
Identities = 26/65 (40%), Positives = 29/65 (44%)
Frame = +3
Query: 26 TSSGGPTQESETANNGSGPIPIVTNNNGSTTTGSGGSGGGGPGGGGGPGGGSFGGGGPYG 85
T G + G+G G G GG GGGG GGGG GGG +GG G YG
Sbjct: 240 TGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYG 419
Query: 86 NNDGY 90
GY
Sbjct: 420 GGGGY 434
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/54 (50%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Frame = +3
Query: 48 VTNNNGSTTTGS---GGSGGGGPGGGG----GPGGGSFGGGGP----YGNNDGY 90
VT NG G+ GG+GGGG GGGG G GGG +GGGG YG GY
Sbjct: 237 VTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGY 398
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 58 GSGGSGGGGPGGGGGPGG-GSFGGGGPYG 85
G GG GGGG GGGGG GG G +GGGG YG
Sbjct: 351 GGGGRGGGGYGGGGGYGGSGGYGGGGGYG 437
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +3
Query: 58 GSGGSGGGGPGGGGGPGGGSFGGGG 82
GSGG GGGG GGGG GGG GGGG
Sbjct: 402 GSGGYGGGGGYGGGGRGGGRGGGGG 476
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/38 (52%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Frame = +3
Query: 53 GSTTTGSGGSGGGGPGGGGG-PGGGSFGGGGPYGNNDG 89
G G G GGGG GG GG GGG +GGGG G G
Sbjct: 354 GGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGG 467
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 58 GSGGSGGGGP-GGGGGPGGG 76
G GG GGGG GG GG GGG
Sbjct: 420 GGGGYGGGGRGGGRGGGGGG 479
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/75 (40%), Positives = 34/75 (45%)
Frame = +3
Query: 35 SETANNGSGPIPIVTNNNGSTTTGSGGSGGGGPGGGGGPGGGSFGGGGPYGNNDGYSNIL 94
S T S IV ++ T S G GGGG GGG GGG FGGGG GN +S +L
Sbjct: 138 STTVALSSAAASIVLHSTPLTPFLSTGGGGGGGTTGGGGGGGWFGGGGGDGNGGFWSRLL 317
Query: 95 KFEVQRLDGKNYMEW 109
D EW
Sbjct: 318 TPAAANADEPQSQEW 362
Score = 32.3 bits (72), Expect = 0.45
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 30 GPTQESETANNGSGPIPIVTNNNGSTTTGSG-GSGGGGPGGGGGPGGGSFGGGGPYGNND 88
GP A+ + P ++ G++T+ S G GG GG GGG GGG G D
Sbjct: 308 GPEASISVASAAAEPTSTSSSAGGASTSASARGEEGGERGGVEDDGGG--GGGECDGGRD 135
Query: 89 GY 90
G+
Sbjct: 134 GF 129
>AV411594
Length = 244
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +2
Query: 919 FLGMEVARSRKGIVVSQRKYILDLLEETGMSGCRPADTPMELNAKL-WEKGNVPVDIGRY 977
FL +A+S+KGI++S+RKY L LL++T GC+P P++ + KL G + D+ Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 978 QRLVG 982
R +G
Sbjct: 230 IRFIG 244
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +3
Query: 904 LAKEFEIKDLGALKYFLGMEVARSRK 929
LAK F++K L +KYFLG+E RK
Sbjct: 6 LAKSFKLKVLDDMKYFLGLE*PSLRK 83
>AV777635
Length = 382
Score = 47.8 bits (112), Expect = 1e-05
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -2
Query: 1002 SQFMHSPYEEHLEAVYRILRYLKSNPGKGLYFKKT 1036
SQFMH P+E HL+ RIL+YLK++PG+GL F+K+
Sbjct: 381 SQFMHDPHERHLD---RILQYLKASPGRGLLFRKS 286
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -2
Query: 1139 RTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTKSLARP 1181
R KHIEID HF+ ++ + I +V SN+Q D+ TKS P
Sbjct: 309 RAKHIEIDFHFL*DRRLYLDISTRFVNSNDQLTDVFTKSWRGP 181
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 1069 NLVTWRSKKQGVVARSSAEAEFRAMA 1094
NL++W+SK+ +VARS AEAEFR MA
Sbjct: 508 NLISWKSKETIIVARSRAEAEFRVMA 431
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,468,655
Number of Sequences: 28460
Number of extensions: 321781
Number of successful extensions: 5271
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 2773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4038
length of query: 1199
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1098
effective length of database: 2,023,140
effective search space: 2221407720
effective search space used: 2221407720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC145330.14