BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145329.12 - phase: 0
(319 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%) 345 4e-96
TC18834 weakly similar to UP|Q84TF2 (Q84TF2) At3g54830, partial ... 34 0.038
BP034655 33 0.064
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 32 0.11
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 32 0.14
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 32 0.19
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 32 0.19
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 31 0.24
BP056955 31 0.24
AV419126 31 0.32
TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%) 31 0.32
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa... 31 0.32
AV407858 30 0.41
BP039346 30 0.71
AV777838 30 0.71
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 30 0.71
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar... 29 0.92
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 29 0.92
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 29 0.92
TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna ... 29 0.92
>TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)
Length = 850
Score = 345 bits (886), Expect = 4e-96
Identities = 182/199 (91%), Positives = 186/199 (93%), Gaps = 2/199 (1%)
Frame = +2
Query: 1 MAVTTHSLTATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEILSALNLLDAALAISPRL 60
MAVT HSL+ATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEI SALNLLDAALAISPRL
Sbjct: 257 MAVTAHSLSATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEIASALNLLDAALAISPRL 436
Query: 61 DQALELRARSLLYLRRFKDVADMLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKL 120
DQALELRARSLLYLRRFK+VADMLQDYIPSLRM NEDP S SSSS SS + SREGVKL
Sbjct: 437 DQALELRARSLLYLRRFKEVADMLQDYIPSLRMANEDPVSVSSSSDCSS-QNLSREGVKL 613
Query: 121 LSS--DSPVRDQSFKCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDAMV 178
LSS DSPVR QSFKCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDAMV
Sbjct: 614 LSSSPDSPVRYQSFKCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDAMV 793
Query: 179 LLQTGKRIASAAFRRESVC 197
LLQTGKR+ASAAFRRESVC
Sbjct: 794 LLQTGKRLASAAFRRESVC 850
>TC18834 weakly similar to UP|Q84TF2 (Q84TF2) At3g54830, partial (48%)
Length = 792
Score = 33.9 bits (76), Expect = 0.038
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 83 MLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDLKK 142
++ D P+ TNE+ SG S++SS +SSR + ++ + +S K +K
Sbjct: 227 VIPDNAPTSMSTNENSESGVKFSANSSLKTSSRHDLAMIFTCKVCETRSIKTVCRESYEK 406
Query: 143 KVMAGLCKSC 152
V+ C C
Sbjct: 407 GVVVARCGGC 436
>BP034655
Length = 517
Score = 33.1 bits (74), Expect = 0.064
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDLK 141
++ SS SSSSSSSS SSSS SS+SP + + +C + L+
Sbjct: 224 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESP-KSAAVRCAAAISLR 84
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSV 137
++ SS SSSSSSSS SSSS SS S +S K +V
Sbjct: 242 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKSAAV 111
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/44 (47%), Positives = 22/44 (49%)
Frame = -3
Query: 99 SSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDLKK 142
SS SSSSSSSS SSSS SS S S S S+ K
Sbjct: 254 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPK 123
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/50 (44%), Positives = 22/50 (44%)
Frame = -3
Query: 100 SGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDLKKKVMAGLC 149
S SSSSSSSS SSSS SS S S S S K A C
Sbjct: 254 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKSAAVRC 105
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/46 (41%), Positives = 24/46 (51%)
Frame = -3
Query: 80 VADMLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
+ + L D + ++ SS SSSSSSSS SSSS SS S
Sbjct: 293 LGETLCDGATGM*SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 156
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
++ SS SSSSSSSS SSSS SS S
Sbjct: 245 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 150
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
++ SS SSSSSSSS SSSS SS S
Sbjct: 248 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 153
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/44 (50%), Positives = 24/44 (54%)
Frame = -3
Query: 88 IPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQS 131
+P L + PSS SSSSSSSS SSSS SS SP S
Sbjct: 903 LPLLLLLFPSPSSSSSSSSSSSSSSSSSSS-SSSSSSSPSSSSS 775
Score = 31.2 bits (69), Expect = 0.24
Identities = 19/34 (55%), Positives = 21/34 (60%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPV 127
++ SS SSSSSSS SSSS K L S SPV
Sbjct: 837 SSSSSSSSSSSSSSSPSSSSSSISSKSLCSASPV 736
Score = 30.4 bits (67), Expect = 0.41
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQS 131
++ SS SSSSSSSS SSSS SS S + +S
Sbjct: 870 SSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKS 757
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/41 (48%), Positives = 20/41 (48%)
Frame = -3
Query: 98 PSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVS 138
PS SSSSSSSS SSSS SS S S S S
Sbjct: 879 PSPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKS 757
Score = 26.6 bits (57), Expect = 6.0
Identities = 19/41 (46%), Positives = 19/41 (46%)
Frame = -3
Query: 100 SGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDL 140
S SSSSSSSS SSSS SS S S S L
Sbjct: 876 SPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKSL 754
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFK--CFSVSDLKKKVMAGLCKS 151
T PSS SSSSSSS SSS SS SP S S DL +V G+C S
Sbjct: 544 TTTTPSSSSSSSSSSFPCSSSTTTSSSSSSSSPFSSSSSSSCACSTRDL-PRVGCGVCSS 368
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1
Query: 98 PSSGSSSSSSSSDSSSSR 115
P S SSSSSSSS SSSSR
Sbjct: 288 PLSSSSSSSSSSSSSSSR 235
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 31.6 bits (70), Expect = 0.19
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +1
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSP 126
++ P S SSSSSSSS SSSS SS SP
Sbjct: 337 SSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSP 435
Score = 28.1 bits (61), Expect = 2.1
Identities = 19/39 (48%), Positives = 19/39 (48%)
Frame = +1
Query: 100 SGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVS 138
S SSSSSSSS SS S SS SP S S S
Sbjct: 271 SASSSSSSSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSS 387
Score = 26.2 bits (56), Expect = 7.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 90 SLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFS 136
S +++ S SSSS SS SSSS S SP S FS
Sbjct: 301 SSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSPFS 441
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 31.6 bits (70), Expect = 0.19
Identities = 22/47 (46%), Positives = 23/47 (48%)
Frame = -3
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDL 140
T+ PSS SSSSSSSS SS S SS S S S S L
Sbjct: 388 TSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSL 248
Score = 30.8 bits (68), Expect = 0.32
Identities = 24/60 (40%), Positives = 25/60 (41%)
Frame = -3
Query: 89 PSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDLKKKVMAGL 148
PS T+ SSSSSSSS SSSS SS S S S S V GL
Sbjct: 409 PSFPSTSTSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLSV*TGL 230
Score = 30.0 bits (66), Expect = 0.54
Identities = 18/38 (47%), Positives = 21/38 (54%)
Frame = -3
Query: 88 IPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
+PS ++ SS SS SSSSS SSSS SS S
Sbjct: 379 LPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSS 266
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 31.2 bits (69), Expect = 0.24
Identities = 19/49 (38%), Positives = 25/49 (50%)
Frame = +2
Query: 90 SLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVS 138
S +T D SSGSSS SSSSDS R + + + + K +S S
Sbjct: 698 SSSVTGSDYSSGSSSDSSSSDSEEERRRRRKKKTQKKKKGRRHKKYSSS 844
>BP056955
Length = 581
Score = 31.2 bits (69), Expect = 0.24
Identities = 17/24 (70%), Positives = 18/24 (74%)
Frame = -1
Query: 98 PSSGSSSSSSSSDSSSSREGVKLL 121
P S SSSSSSSS SS +RE V LL
Sbjct: 86 PPSSSSSSSSSSSSSLARERVSLL 15
>AV419126
Length = 230
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3
Query: 88 IPSLRMTNEDPSSGSSSSSSSSDSSSSR 115
+PS R + SS SSSSSSSS S SSR
Sbjct: 117 VPSSRSVSSSSSSCSSSSSSSSHSPSSR 200
>TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%)
Length = 557
Score = 30.8 bits (68), Expect = 0.32
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -3
Query: 95 NEDPSSGSSSSSSSSDSSSSREGVKLLSSDSP 126
N SS SSSSSSSS S S ++G+ + +S P
Sbjct: 465 NSSSSSSSSSSSSSSSSESLKQGITIHNSLFP 370
>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (4%)
Length = 756
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/29 (62%), Positives = 18/29 (62%)
Frame = +1
Query: 97 DPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
D S GSSSSSSSS SSSS SS S
Sbjct: 220 DTSPGSSSSSSSSSSSSSPSSASTSSSPS 306
>AV407858
Length = 420
Score = 30.4 bits (67), Expect = 0.41
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 84 LQDYIPSLRMTNEDPSSGS----SSSSSSSDSSSSREGVKLLSSDSPVRDQSFKC 134
+ D SLR T P S + SS+SSS + +++ L SS P+R +S +C
Sbjct: 234 ISDSSTSLRWTRPHPISTAPPSPSSTSSSRNITTTSNAHCLTSSQLPIRSESLRC 398
>BP039346
Length = 470
Score = 29.6 bits (65), Expect = 0.71
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -1
Query: 89 PSLRMTNEDPSSGSSSSSSSSDSSSSREGVKL 120
P R+ + PSS SSSSSSSS S++ + + L
Sbjct: 428 PKHRLHHPQPSSSSSSSSSSSSSAAPKHPLPL 333
>AV777838
Length = 565
Score = 29.6 bits (65), Expect = 0.71
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 98 PSSGSSSSSSSSDSSSSREGVK 119
PSS SSSSSSSS SSSS ++
Sbjct: 214 PSSSSSSSSSSSSSSSSSSSMR 279
Score = 27.3 bits (59), Expect = 3.5
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1
Query: 93 MTNEDPSSGSSSSSSSSDSSSS 114
+T SS SSSSSSSS SSSS
Sbjct: 202 ITGPPSSSSSSSSSSSSSSSSS 267
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 29.6 bits (65), Expect = 0.71
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1
Query: 94 TNEDPSSGSSSSSSSSDSSSSREGVKL 120
++ SS SSSSSSSS SSSS G+ L
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSGLGL 70
Score = 29.3 bits (64), Expect = 0.92
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = -1
Query: 89 PSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPV 127
PS ++ SS SSSSSSSS SSS K L D V
Sbjct: 156 PSSSSSSSSSSSSSSSSSSSSSSSSGLGLNKRLKPDGAV 40
Score = 26.9 bits (58), Expect = 4.6
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -1
Query: 91 LRMTNEDPSSGSSSSSSSSDSSSS 114
L ++ SS SSSSSSSS SSSS
Sbjct: 162 LSPSSSSSSSSSSSSSSSSSSSSS 91
>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;}, partial (28%)
Length = 812
Score = 29.3 bits (64), Expect = 0.92
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = -2
Query: 44 LSALNLLDAALAISPRLDQALELRARSLLYLRRFKDVADMLQDYIPSL------RMTNED 97
L A LL AA + + D AL SL R+K + +L + S+ ++ D
Sbjct: 391 LGAWELLRAAAEVVKK-DSALAASLWSL----RWKSCSGVLVEESASMWWS*SESVSGSD 227
Query: 98 PSSGSSSSSSSSDSSSSREG 117
PS SSSSS SSSS G
Sbjct: 226 PSDSGMESSSSSSSSSSDSG 167
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/51 (39%), Positives = 24/51 (46%)
Frame = -3
Query: 90 SLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVSDL 140
S + SS SSSSSS S SSSS SS + S+ S S+L
Sbjct: 323 SASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSSYS*TSASNL 171
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/52 (38%), Positives = 24/52 (45%)
Frame = -3
Query: 87 YIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDSPVRDQSFKCFSVS 138
+I S ++ S+ SSSSSSSS SS S SS S S S S
Sbjct: 347 WIGSSSSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSSYS 192
Score = 26.2 bits (56), Expect = 7.8
Identities = 28/73 (38%), Positives = 33/73 (44%)
Frame = -3
Query: 66 LRARSLLYLRRFKDVADMLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSSDS 125
LR RS R+ D A + I S M + GSSSSSS+S S+SS SS S
Sbjct: 440 LRIRSAT--SRWLDAASARRLMICSFPMGSRSFWIGSSSSSSASASTSSSSS-SSSSSSS 270
Query: 126 PVRDQSFKCFSVS 138
P S S S
Sbjct: 269 PSSSSSSSSSSSS 231
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 29.3 bits (64), Expect = 0.92
Identities = 17/26 (65%), Positives = 18/26 (68%)
Frame = -3
Query: 99 SSGSSSSSSSSDSSSSREGVKLLSSD 124
SS SSSSSSS+SSSS LL SD
Sbjct: 188 SSSLSSSSSSSESSSSSSSSLLLPSD 111
>TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna binding
domain) containing protein 4 {Caenorhabditis elegans;} ,
partial (8%)
Length = 449
Score = 29.3 bits (64), Expect = 0.92
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = +2
Query: 99 SSGSSSSSSSSDSSSSREGVKLLSS 123
SSGSSSSSSS SSSS K L S
Sbjct: 221 SSGSSSSSSSGSSSSSPHAFKPLPS 295
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,845,470
Number of Sequences: 28460
Number of extensions: 91126
Number of successful extensions: 2572
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of query: 319
length of database: 4,897,600
effective HSP length: 90
effective length of query: 229
effective length of database: 2,336,200
effective search space: 534989800
effective search space used: 534989800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC145329.12