BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145222.8 + phase: 0
(209 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8436 homologue to UP|PSAD_LYCES (P12372) Photosystem I reactio... 364 e-102
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%) 33 0.028
TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan prot... 32 0.061
TC12563 similar to GB|BAB02785.1|9294523|AB023036 protein transp... 32 0.080
TC15267 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Ce... 32 0.080
TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like p... 32 0.10
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 31 0.18
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 31 0.18
TC9224 similar to GB|AAP21230.1|30102624|BT006422 At3g49750 {Ara... 30 0.23
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 29 0.52
TC11507 weakly similar to UP|Q9HD28 (Q9HD28) Retinitis pigmentos... 28 0.89
AW719831 28 1.2
TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating ... 28 1.2
AV409412 28 1.5
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 28 1.5
TC9450 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7... 28 1.5
AI967693 27 2.0
TC19199 27 2.0
TC16815 similar to UP|BSL1_ARATH (Q8L7U5) Serine/threonine prote... 27 2.0
AV778797 27 2.6
>TC8436 homologue to UP|PSAD_LYCES (P12372) Photosystem I reaction center
subunit II, chloroplast precursor (Photosystem I 20 kDa
subunit) (PSI-D), partial (77%)
Length = 777
Score = 364 bits (935), Expect = e-102
Identities = 188/215 (87%), Positives = 192/215 (88%), Gaps = 6/215 (2%)
Frame = +3
Query: 1 MAMATQASLFTPPLSS--PKPWKQPSTLSFISLKPIKFTTK----TTKISAADEKTEAAS 54
MAMATQASLF+PPLS PWKQ TLSF + KP+KFTT TT I AADEKTEA
Sbjct: 27 MAMATQASLFSPPLSGRVSAPWKQSPTLSFTNTKPLKFTTSPRTTTTTIRAADEKTEAP- 203
Query: 55 VTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 114
V TKE AAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct: 204 VATKE---AAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 374
Query: 115 TGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 174
TGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE
Sbjct: 375 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 554
Query: 175 KVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
KVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQP+DV
Sbjct: 555 KVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 659
>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
Length = 425
Score = 33.5 bits (75), Expect = 0.028
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +3
Query: 18 KPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAP------AAPVGFTPP 71
+PW PST + +L P TT TT A TTK P AAP TPP
Sbjct: 30 QPWSSPSTKAVTTLTPPTPTTTTT-----------AETTTKNNTPTTLLHQAAPAALTPP 176
>TC9626 weakly similar to UP|Q8LEE9 (Q8LEE9) Arabinogalactan protein-like,
partial (24%)
Length = 605
Score = 32.3 bits (72), Expect = 0.061
Identities = 28/84 (33%), Positives = 35/84 (41%)
Frame = +1
Query: 11 TPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAAPVGFTP 70
T P S K KQ S + PI FTT + + AA K A + AP AP
Sbjct: 43 TKPELSIKKMKQAIFFSLLLFAPIFFTTISAQSPAASPKKSPAKPSPASLAP-APAKPLV 219
Query: 71 PELDPNTPSPIFGGSTGGLLRKAQ 94
P L + S G +LRKA+
Sbjct: 220 PSLPQSPSSDSSGQDIIKILRKAK 291
>TC12563 similar to GB|BAB02785.1|9294523|AB023036 protein transport protein
Sec23 {Arabidopsis thaliana;} , partial (16%)
Length = 469
Score = 32.0 bits (71), Expect = 0.080
Identities = 24/67 (35%), Positives = 31/67 (45%)
Frame = +1
Query: 13 PLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAAPVGFTPPE 72
PLS+ KP PST S S P + + + I+A T + TT P +PV T
Sbjct: 214 PLSAAKPAPPPSTPSPASTSPPRSGSAPSAINA----TISLLTTTPSPRPISPVNSTLNT 381
Query: 73 LDPNTPS 79
NTPS
Sbjct: 382 PPSNTPS 402
>TC15267 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein), partial (6%)
Length = 1003
Score = 32.0 bits (71), Expect = 0.080
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 11 TPPLSSPKPWKQPSTLSFISLKPI-KFTTKTTKISAADEKTEAASVTTKEEAPAAPVG-- 67
+P SS PW PS S + P T +S + ++ + PA+P
Sbjct: 160 SPSSSSLSPWLSPSPPSSTTPPPPPSHRTNNNNLSTQPTPSAPSATSLASRTPASPPSPP 339
Query: 68 --FTPPELDPNTPSP 80
TPP +P++PSP
Sbjct: 340 PTTTPPTHNPSSPSP 384
>TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like protein
(AT5g16880/F2K13_30), partial (77%)
Length = 1574
Score = 31.6 bits (70), Expect = 0.10
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 4 ATQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTK-ISAADEKTEAASVTTKEEAP 62
+T +S PP S P P + S S PI+ T T+ +S + T+A +T +
Sbjct: 250 STSSSKTPPPKPSMNPIGPPISTSATSSTPIRSTASTSSALSRSGSWTKALGFSTSHSSS 429
Query: 63 AAPVGFTPPELDPNTP 78
PV T L +P
Sbjct: 430 LKPVSRTARRLSLKSP 477
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 30.8 bits (68), Expect = 0.18
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Frame = +3
Query: 12 PPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKT---EAASVTTKEEAPAA---- 64
PP +SP P + + S S P T T+ A D A S TT + P+A
Sbjct: 744 PPAASPAPGAESPSSSPTSNSPAGGPTATSPSPAGDSPAGGPPAPSPTTGDTPPSASGPD 923
Query: 65 --PVGFTPPELDPNTPSPIFGGST 86
P G TP L +TPS ST
Sbjct: 924 VSPSG-TPSSLPADTPSSSSNNST 992
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 30.8 bits (68), Expect = 0.18
Identities = 20/75 (26%), Positives = 31/75 (40%)
Frame = +2
Query: 5 TQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAA 64
T ++ +P ++PKP P+ S + S++ AS TK P++
Sbjct: 116 TTSTTSSPTSTTPKPSPSPAPSSTLRAP-----------SSSPASASPASSPTKSPKPSS 262
Query: 65 PVGFTPPELDPNTPS 79
P PP P TPS
Sbjct: 263 PSASAPPSSTPLTPS 307
>TC9224 similar to GB|AAP21230.1|30102624|BT006422 At3g49750 {Arabidopsis
thaliana;}, partial (77%)
Length = 1318
Score = 30.4 bits (67), Expect = 0.23
Identities = 23/86 (26%), Positives = 37/86 (42%), Gaps = 9/86 (10%)
Frame = +2
Query: 5 TQASLFTPPLSSPKPWKQPSTL---SFISLKPIKFTTKTTKISAADEKTEAASVTTKEEA 61
T L +PP SSP P ++ S L S S P+ + + S+ + +S + K +
Sbjct: 629 TSKLLTSPPTSSPDPSRRTSNLWSTSPCSTSPLTASKGRFRRSSQCARISTSSTSIKTFS 808
Query: 62 PA------APVGFTPPELDPNTPSPI 81
P + +PP P T SP+
Sbjct: 809 PGLFLSNWVSLFVSPPSTSPTTASPV 886
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 29.3 bits (64), Expect = 0.52
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +1
Query: 11 TPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAAPVGFTP 70
TPP SSP + S P+ + ++A A++T+ P+ P P
Sbjct: 187 TPPTSSPPAIHVSLSAKSASKPPLASHARPMPPTSASP----ATMTSTPPTPSPPATNVP 354
Query: 71 PELDPNTPSPIFGGST 86
P L +TP P +T
Sbjct: 355 PSLPSSTPPPPTSSTT 402
>TC11507 weakly similar to UP|Q9HD28 (Q9HD28) Retinitis pigmentosa GTPase
regulator (Fragment), partial (3%)
Length = 744
Score = 28.5 bits (62), Expect = 0.89
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 3/56 (5%)
Frame = -3
Query: 10 FTPP---LSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAP 62
F PP L P+P PS LS K + TKTTK S D + + + + P
Sbjct: 514 FGPPNP*LKPPQPSSSPSLLSH---KKLVHATKTTKSSNLDSNPSPSHPSLRNQGP 356
>AW719831
Length = 436
Score = 28.1 bits (61), Expect = 1.2
Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 8/78 (10%)
Frame = +1
Query: 12 PPLSSPKPWKQP-STLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAAP----- 65
PP +P P ST + L P ++ + A + + A + TT +PA P
Sbjct: 172 PPTMTPTTTTTPPSTNPHLLLPPPPHARSSSCAATAAKSSPAPTTTTSPTSPATPRSSPS 351
Query: 66 --VGFTPPELDPNTPSPI 81
+PP + PSPI
Sbjct: 352 TASSSSPPSSPSSLPSPI 405
>TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating protein
1, partial (3%)
Length = 643
Score = 28.1 bits (61), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 1 MAMATQASLFTP---PLSSPKPWKQPSTLSFISLKPI-KFTTKTTKISAADEK 49
MA+ + TP P SPKP PS+ +SL+P+ +F +++ +EK
Sbjct: 40 MALLSLNHTLTPSLFPSPSPKPKPAPSSPFLVSLRPLPRFPRHAVRMAPEEEK 198
>AV409412
Length = 426
Score = 27.7 bits (60), Expect = 1.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 7 ASLFTPPL--SSPK--PWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEAP 62
AS PP SSP P + PS L +S P + S + + +++ + P
Sbjct: 187 ASTLAPPTIPSSPSLPPSRNPSLLHHLSPSP-----SLSLPSPSPSPSTSSATSPPTPPP 351
Query: 63 AAPVGFTPPELDPNTPSP 80
++P PP P+T SP
Sbjct: 352 SSPPSSPPPPPPPSTSSP 405
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 27.7 bits (60), Expect = 1.5
Identities = 24/86 (27%), Positives = 33/86 (37%), Gaps = 9/86 (10%)
Frame = +1
Query: 4 ATQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTK-EEAP 62
++ +S PP S +P PST + P TK T+ T S T+ E P
Sbjct: 52 SSSSSYSPPPPPSQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSPTSSASEEP 231
Query: 63 AAPVGFT--------PPELDPNTPSP 80
+ P T P P +PSP
Sbjct: 232 SPPNPSTSTTQQPKHSPTSPPASPSP 309
>TC9450 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7.2
{Arabidopsis thaliana;}, partial (22%)
Length = 646
Score = 27.7 bits (60), Expect = 1.5
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Frame = +3
Query: 4 ATQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTK--------------ISAADEK 49
A +S PP +SP P +P++L + + T T +SAAD
Sbjct: 75 APASSTSPPPATSPAPTAKPASLKRSTPTNHRITLTLTVSARYLKIPFLPGG*VSAADAA 254
Query: 50 T-EAASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGST 86
T EAA ++T+ A P+ P + + P F +T
Sbjct: 255 TPEAAPLSTQSSCFAEPLTTEPIKKEAPPPPSSFTTTT 368
>AI967693
Length = 465
Score = 27.3 bits (59), Expect = 2.0
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 38 TKTTKISAADEKTEAASVTTKEEAPAAPVGFTPPELDPNTPSPI 81
+KT K AA A++ K+EAP+ PE +PN+PSP+
Sbjct: 179 SKTNK*IAA-----MAAINPKKEAPS-------PESNPNSPSPV 84
>TC19199
Length = 498
Score = 27.3 bits (59), Expect = 2.0
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 8/51 (15%)
Frame = +3
Query: 34 IKFTTKTTKISAADEKTEAASVTTKEEAPAAPV-------GFTPPE-LDPN 76
+KF KTT + +KT +S + E P P+ G TPP+ + PN
Sbjct: 171 VKFCLKTTSLPERRKKTSKSSESAAEILPLKPMHPQQPKHGGTPPQKMHPN 323
>TC16815 similar to UP|BSL1_ARATH (Q8L7U5) Serine/threonine protein
phosphatase BSL1 (BSU1-like protein 1) , partial (8%)
Length = 512
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = +1
Query: 7 ASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTT 57
AS PP P P F SL+ I+F K K S +T AAS ++
Sbjct: 178 ASPGPPPAPPPPPLPLLGFFFFFSLRSIQFCCKLKKTSIDGVETVAASCSS 330
>AV778797
Length = 558
Score = 26.9 bits (58), Expect = 2.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 7 ASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAAD-EKTEAASVTTKEEAP 62
A ++TP SP P PS + +P+ ++ T+ A D T V+T+ + P
Sbjct: 67 ARIYTPSPPSPSPSPSPSPTGPLRPQPLLLSS*PTRFLAVDFNNTNHNQVSTRLQIP 237
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,573,659
Number of Sequences: 28460
Number of extensions: 49706
Number of successful extensions: 397
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of query: 209
length of database: 4,897,600
effective HSP length: 86
effective length of query: 123
effective length of database: 2,450,040
effective search space: 301354920
effective search space used: 301354920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC145222.8