TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145222.7 - phase: 0 
         (435 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18326 weakly similar to UP|O23033 (O23033) YUP8H12.2 protein, ...   170  4e-43
TC10803 similar to UP|O23033 (O23033) YUP8H12.2 protein, partial...    89  1e-18
BP042176                                                               29  1.7
AV768744                                                               28  2.3
TC15348 weakly similar to GB|AAA32913.1|166949|AVOCYP cytochrome...    28  2.3
TC18637 similar to UP|BAD12326 (BAD12326) NADH dehydrogenase sub...    27  5.1
BP043826                                                               27  8.6
AV778161                                                               27  8.6

>TC18326 weakly similar to UP|O23033 (O23033) YUP8H12.2 protein, partial
           (19%)
          Length = 655

 Score =  170 bits (431), Expect = 4e-43
 Identities = 83/102 (81%), Positives = 92/102 (89%), Gaps = 3/102 (2%)
 Frame = +2

Query: 300 SHIPGFASVLPKLTANLHAMKDKYLKAPHPVSPNTKGKKWDFSFTSIWNTVVWLMLMNFF 359
           SHIPGFASVLP + A LHAMKDKYLKAPHPVSPN +GKKWDFSF SIWNTVVWLMLMNFF
Sbjct: 2   SHIPGFASVLPTVIAKLHAMKDKYLKAPHPVSPNIQGKKWDFSFASIWNTVVWLMLMNFF 181

Query: 360 IKIVNSTAQTHLKKQQESEVAALTKK---SDSDTQ*NALIII 398
           +KIVN+TAQT+LKKQQE E+AALTKK   SDSDTQ*NA +++
Sbjct: 182 VKIVNATAQTYLKKQQERELAALTKKFTTSDSDTQ*NAHVLL 307


>TC10803 similar to UP|O23033 (O23033) YUP8H12.2 protein, partial (11%)
          Length = 551

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 39/52 (75%), Positives = 47/52 (90%)
 Frame = +3

Query: 333 NTKGKKWDFSFTSIWNTVVWLMLMNFFIKIVNSTAQTHLKKQQESEVAALTK 384
           N +GKKWDFS  S+WNTVVWLMLMNFF+KIVNSTAQ+++KKQQE E+AA T+
Sbjct: 69  NFQGKKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAASTE 224


>BP042176 
          Length = 474

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 12/27 (44%), Positives = 20/27 (73%)
 Frame = +3

Query: 190 AARLSGSRMDAMEELDSEDKGVLNQIK 216
           AAR+ G    ++EEL  +D+GV+NQ++
Sbjct: 132 AARIXGR*KYSLEELHGKDRGVVNQLR 212


>AV768744 
          Length = 526

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 217 CWFFSHTQHLNFFTILVLASVPNPL 241
           C   + T+HL+FFTI VL ++P  L
Sbjct: 153 CSIPTRTRHLSFFTIYVLENIPTRL 79


>TC15348 weakly similar to GB|AAA32913.1|166949|AVOCYP cytochrome
           P-450LXXIA1 (cyp71A1) {Persea americana;} , partial
           (23%)
          Length = 614

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 28  KKTMLYLLAKGGWLMLFSVAVGTLGVVLMTLGCLHEKHLEEFLEYFRFGLWWVALGVASS 87
           KK  L L+AK        +++    V L+ L CL E H++  + Y    L+W  + +   
Sbjct: 419 KKNHLCLVAKNRT*KSL*ISIIQFHVCLLYLSCLQEPHVKLTVTYINATLFWSLIIIMKL 598

Query: 88  IGLGS 92
             + S
Sbjct: 599 FNISS 613


>TC18637 similar to UP|BAD12326 (BAD12326) NADH dehydrogenase subunit 2,
           partial (5%)
          Length = 506

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 3   LENLTLTTQPFKTLKYSTLAVIQYIKKTMLYLLAKGGWLMLFSVA 47
           L  LTL+  PF  + +  LA+I +I+      +   GW+  FS++
Sbjct: 342 LSLLTLSILPFPRVSFFWLAIICFIRGRGSLSMGFTGWVAFFSLS 208


>BP043826 
          Length = 454

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 14/36 (38%), Positives = 19/36 (51%)
 Frame = +1

Query: 76  GLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIK 111
           GLWWV L +A    L   LH F L +G  +  + I+
Sbjct: 343 GLWWVDLWLAGDRLLLYYLHAFPLIIG*GMIYYNIE 450


>AV778161 
          Length = 548

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 276 TVFIISVCNNQLLDWIENEFIWVLSHIPGFASVLPKL 312
           T++++      +LDW+E  +   LSH   + S+LP +
Sbjct: 430 TLWVMVTIMRTVLDWLEVPYHTELSHCSYYMSLLPSI 540


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.143    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,434,382
Number of Sequences: 28460
Number of extensions: 124971
Number of successful extensions: 901
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of query: 435
length of database: 4,897,600
effective HSP length: 93
effective length of query: 342
effective length of database: 2,250,820
effective search space: 769780440
effective search space used: 769780440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)