TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145221.2 - phase: 0 
         (704 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052828                                                              106  1e-23
BP065719                                                               44  7e-05
TC10202 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein ...    28  3.8
TC12402 similar to UP|AAS46231 (AAS46231) Methionine sulfoxide r...    28  6.5
TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, p...    28  6.5
TC8397 similar to UP|Q9RV45 (Q9RV45) S-layer-like array-related ...    27  8.5

>BP052828 
          Length = 523

 Score =  106 bits (264), Expect(2) = 1e-23
 Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 3/149 (2%)
 Frame = +2

Query: 502 PVAIGKVNVGKALIDLGSSINLIPYSVVKRVGGLDMKLTRMTLQLADKSVARPMGIAEDV 561
           P  IG       ++DLG+ IN++P S+   +    ++ T + +QLA++S ARP G+ EDV
Sbjct: 71  PCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGVVEDV 250

Query: 562 LVKVDKFVFPVDFVVMDIE---EDDDVPLILGRTFMLAARMMIDYDDGLMKVRLDDEEIN 618
           LV+V++ +FP DF ++D+E   +    P+ILGR FM  A+  ID D+G M +   D    
Sbjct: 251 LVQVNELIFPADFYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGDIIAK 430

Query: 619 FNLHSAMKHSKDKGACFKVDAMDEVIMET 647
           FN+  AMKH  +  + F +  + E++ +T
Sbjct: 431 FNIDDAMKHPLEDHSVFHIGVVSELVDDT 517



 Score = 21.2 bits (43), Expect(2) = 1e-23
 Identities = 7/9 (77%), Positives = 9/9 (99%)
 Frame = +1

Query: 489 LPKKEKDPG 497
           LP+K+KDPG
Sbjct: 34  LPQKQKDPG 60


>BP065719 
          Length = 567

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 32/129 (24%), Positives = 58/129 (44%)
 Frame = +3

Query: 53  FAGLDHEDPYQHLSVFYALANSLGASEDEEEAGFLRLFQHSLIGKAREWYLDQSPDVLKD 112
           F+G   E   +H++ +   A  L  +E+ +    ++ F  SL   A  W+   +P  +  
Sbjct: 198 FSGDSGESTVEHIARYQIEAGDLAINENLK----MKYFPSSLTKNAFTWFTTLAPRSVHT 365

Query: 113 WNALEKAFQERFFPDHKHMDTKTAIAMFAQGADESLCDAWERYKSLLRKCPKHGFDDATQ 172
           W  LE+ F E+FF     +  K  +A   +   ES+ D   R++ L  +C  H   +   
Sbjct: 366 WAQLERIFHEQFFRGECKVSXKD-LASVKRKPAESIDDYLNRFRMLKSRCFTH-VSEHEL 539

Query: 173 IHMFRGGLQ 181
           + +  GGL+
Sbjct: 540 VVLXAGGLE 566


>TC10202 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
           partial (60%)
          Length = 664

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 266 KEQIQKEQRHQQVHFCEMCSGDHPTGYCPPQ 296
           KEQ +  +R +Q   C++C  +H     PPQ
Sbjct: 456 KEQRRSREREEQQP*CKLCESEHGWSTLPPQ 548


>TC12402 similar to UP|AAS46231 (AAS46231) Methionine sulfoxide reductase A,
           partial (95%)
          Length = 756

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 19/54 (35%), Positives = 26/54 (47%)
 Frame = +3

Query: 224 GTQRKSGILELGSNDANLAQTKLLTQQMEEMMKQMKEMPKLVKEQIQKEQRHQQ 277
           GTQ +SGI       A LAQ     +Q+E   K + E+    K   + E+ HQQ
Sbjct: 351 GTQYRSGIYYYNETQARLAQESKEAKQLELKGKVVTEILP-AKRFYRAEEYHQQ 509


>TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, partial (7%)
          Length = 1367

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
 Frame = +1

Query: 373  DTLNQFMQLTMANQ------QNNRIHKESDVEKDKKKEVGKNVPAHKLPYPKAQSKKDLE 426
            DT +  ++  +AN       Q N + + SDV K ++ +  K     KLPY KA   + L 
Sbjct: 952  DTTSTALEWVLANLDKYPRVQKNIVDEISDVMKGREDKEVKEEDLVKLPYLKAVILEGLR 1131

Query: 427  KH 428
            +H
Sbjct: 1132 RH 1137


>TC8397 similar to UP|Q9RV45 (Q9RV45) S-layer-like array-related protein,
           partial (5%)
          Length = 1357

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -2

Query: 322 NQQRFPNNNNFQRG----NNFRQPWKSNAG---PSNQQPFNNNFQQYPPQQ 365
           NQ++FP+N ++QR         QPW ++ G   PS +     +F  + P Q
Sbjct: 798 NQEQFPDNMDWQRK*EPLQLTVQPWLASQG*QHPSPEGSLQYHFASFSPHQ 646


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,796,391
Number of Sequences: 28460
Number of extensions: 139086
Number of successful extensions: 721
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of query: 704
length of database: 4,897,600
effective HSP length: 97
effective length of query: 607
effective length of database: 2,136,980
effective search space: 1297146860
effective search space used: 1297146860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)