BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV422734 28 0.78
TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 prote... 27 1.0
AV411191 27 1.7
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 26 2.3
TC18849 26 3.0
AV408212 26 3.0
CB828003 25 3.9
BP057299 25 3.9
AV410007 25 3.9
BP039137 25 5.1
TC7839 homologue to UP|Q93XW1 (Q93XW1) 14-3-3 protein, complete 25 5.1
AW719943 25 5.1
AV765948 25 5.1
BP029370 25 6.6
TC20032 24 8.6
AV415922 24 8.6
TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein... 24 8.6
BG662289 24 8.6
TC14037 similar to UP|O81698 (O81698) Proline-rich protein, part... 24 8.6
>AV422734
Length = 448
Score = 27.7 bits (60), Expect = 0.78
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 12 NAVVQRMQQQPPAQQRQQQQ-ARPTFPL 38
N + Q+ QQQ P QQ+QQQ+ RP P+
Sbjct: 358 NHLQQQQQQQQPQQQQQQQKMVRPGNPM 441
>TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 protein, partial
(37%)
Length = 715
Score = 27.3 bits (59), Expect = 1.0
Identities = 15/42 (35%), Positives = 20/42 (46%)
Frame = -3
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPML 42
PLPS QPQ+P N + P + + PT P +P L
Sbjct: 422 PLPSSQPQLP-NTLPPLPTFPLPTAPKLTLPSLPTLPTVPFL 300
>AV411191
Length = 413
Score = 26.6 bits (57), Expect = 1.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 16 QRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*SIASQV 65
Q+ PP QQR+++ T +P + +L+ +L G A S+ ++
Sbjct: 108 QQKPPPPPLQQRRRKHGLVTTETLPEVLNRLVTDILFPGPADDASLLRRI 257
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 8 QVPVNAVVQRMQQQPPAQQRQQQQARPTFPLI 39
Q+P Q++QQQPP + QQQ + P +
Sbjct: 5 QLPQLQQQQQLQQQPPQLTQLQQQQQQQLPQV 100
>TC18849
Length = 770
Score = 25.8 bits (55), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
Frame = -3
Query: 2 LPSGQPQVPVNAVVQRMQQ--QPPAQQRQQQQARP 34
+ SGQ QVP N+ QR Q PA R++QQ P
Sbjct: 579 ISSGQKQVPQNSQSQR*QLACTSPATHRRRQQ*TP 475
>AV408212
Length = 362
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 12 NAVVQRMQQQPPAQQRQQQQ 31
+A +Q+ QQQ QQ+QQQQ
Sbjct: 78 HAALQQQQQQQQQQQQQQQQ 137
Score = 25.0 bits (53), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 16 QRMQQQPPAQQRQQQQARPTFP 37
Q+ QQQ QQ+QQQQ++ P
Sbjct: 96 QQQQQQQQQQQQQQQQSQQQQP 161
Score = 24.6 bits (52), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 13 AVVQRMQQQPPAQQRQQQQ 31
A+ Q+ QQQ QQ+QQQQ
Sbjct: 84 ALQQQQQQQQQQQQQQQQQ 140
>CB828003
Length = 442
Score = 25.4 bits (54), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 83 RRMLRVEVHCKKTHRPRKIDL*E*RPSCRRQSSSE 117
RR R E H + H PR+ID P +RQ ++
Sbjct: 99 RRRRRRETHLRPQHHPRRID-----PRSQRQDLTD 188
>BP057299
Length = 551
Score = 25.4 bits (54), Expect = 3.9
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = -3
Query: 4 SGQP-QVPVNAVVQRMQQQPPAQQRQ-----QQQARPTFPLIPMLYAKLLPTLL 51
SG P P+N + R+ PP R+ QQQ P L L L PTLL
Sbjct: 351 SGHPFHHPLNLI--RLHHHPPPYHRRHELLLQQQLLPLLHLQSFLLLLLFPTLL 196
>AV410007
Length = 425
Score = 25.4 bits (54), Expect = 3.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 6 QPQVPVNAVVQRMQQQPPAQQRQQQQ--ARPTF 36
+P+ Q+ QQQ QQ +QQQ +RPTF
Sbjct: 195 KPKFTNTKAQQQRQQQQQRQQAKQQQNGSRPTF 293
>BP039137
Length = 577
Score = 25.0 bits (53), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 77 CYGS*CRRMLRVEVHCKKTHRPRKIDL*E*RPSC--RRQSSSESRCC 121
CY C RV +HC + + +* *+ C +R SSS + CC
Sbjct: 269 CYVCGCCSCYRVALHC*V----KSMAI*H*KSLCSAKRMSSSHTTCC 397
>TC7839 homologue to UP|Q93XW1 (Q93XW1) 14-3-3 protein, complete
Length = 1284
Score = 25.0 bits (53), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (46%)
Frame = +1
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQ 55
PSG P RM +Q ++ QQ + ++ ++ +LLP + KG+
Sbjct: 808 PSGPPTC-------RMMEQMKLKKHQQNPMNSSEDILLLIRIELLPYMFFKGE 945
>AW719943
Length = 508
Score = 25.0 bits (53), Expect = 5.1
Identities = 13/34 (38%), Positives = 16/34 (46%)
Frame = +2
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTF 36
P Q N++ QQQ QQ+QQQQ F
Sbjct: 128 PQQQSPFQQNSLFNSQQQQFQQQQQQQQQQHQLF 229
>AV765948
Length = 327
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 74 PSRCYGS*CRRMLRVEVHCKKTH 96
PS CY C ++ V +H KTH
Sbjct: 255 PSCCYSPFC*EIMEVCIHLLKTH 187
>BP029370
Length = 364
Score = 24.6 bits (52), Expect = 6.6
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 15 VQRMQQQPPAQQRQQQQ 31
+Q+ QQQ QQ+QQQQ
Sbjct: 171 IQQQQQQQQEQQQQQQQ 221
>TC20032
Length = 655
Score = 24.3 bits (51), Expect = 8.6
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 2 LPSGQPQVPVNAVVQRMQQQPP 23
LP + VPV ++QR++ QPP
Sbjct: 151 LPRREFLVPVQNLLQRVENQPP 86
>AV415922
Length = 422
Score = 24.3 bits (51), Expect = 8.6
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 19 QQQPPAQQRQQQQARPT 35
QQQ QQ+QQQQ +P+
Sbjct: 189 QQQQQQQQQQQQQQQPS 239
>TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein B13-1-9,
partial (53%)
Length = 969
Score = 24.3 bits (51), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLY 43
P+ + QVP + Q QQ+QQQQ P+ P L+
Sbjct: 246 PTTRLQVPCHRRQTHTVQLHHHQQQQQQQPPPSLQPCPQLH 368
>BG662289
Length = 465
Score = 24.3 bits (51), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 7/42 (16%)
Frame = -2
Query: 2 LPSGQPQVPVN--AVVQRMQQQPP-----AQQRQQQQARPTF 36
L S P P+ ++ RMQQ PP Q+ +Q+ RP F
Sbjct: 329 LSSTLPSFPIGWPSLTSRMQQAPPLTEPGEQKMHEQKHRPFF 204
>TC14037 similar to UP|O81698 (O81698) Proline-rich protein, partial (25%)
Length = 465
Score = 24.3 bits (51), Expect = 8.6
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 NAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*SIASQV-PFGPQ 70
N + M Q ++ QQQAR PML L ++ G + + +V P PQ
Sbjct: 84 NQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQSPQVVPKVQPMVPQ 263
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,915
Number of Sequences: 28460
Number of extensions: 38044
Number of successful extensions: 426
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of query: 141
length of database: 4,897,600
effective HSP length: 81
effective length of query: 60
effective length of database: 2,592,340
effective search space: 155540400
effective search space used: 155540400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 51 (24.3 bits)
Medicago: description of AC145220.5