TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145220.4 - phase: 0 /pseudo
         (1391 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              135  4e-32
BI417841                                                               75  9e-14
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ...    61  1e-09
TC18698                                                                57  2e-08
AV410603                                                               51  1e-06
BP067981                                                               29  5.8
TC16956 homologue to UP|Q9FJH0 (Q9FJH0) GTP-binding protein, ras...    28  7.6
TC17862                                                                28  9.9

>BG662087 
          Length = 373

 Score =  135 bits (340), Expect = 4e-32
 Identities = 64/119 (53%), Positives = 84/119 (69%)
 Frame = +1

Query: 675 GKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREK 734
           GK RM VD+ DLNKA PKD++PLP ID LVD  +  ++ S MD +SGY+QIKM P D +K
Sbjct: 16  GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195

Query: 735 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 793
           T+F+T    +CY+ +PFGL NAGATYQ  M  +F D + + +EVY+D+MIVKS     H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>BI417841 
          Length = 617

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
 Frame = +1

Query: 1076 GEGPDPNSKWGLVFDGAV--NAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACI 1133
            G   + N    L FDG+   N    G GAV+ +  G  + +    +   TNN AEY   I
Sbjct: 109  GRQSNANRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLI 285

Query: 1134 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1193
             G++ A +   +H+++ GDS LV  Q++G W+  + N+    + A+ L + F   +++H+
Sbjct: 286  LGLKHAHEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHV 465

Query: 1194 PRDENQMADALATLSSMFRVNH 1215
            PR  N  AD  A L       H
Sbjct: 466  PRQYNSEADVQANLGVNLPAGH 531


>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
          Length = 632

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/91 (32%), Positives = 45/91 (48%)
 Frame = +2

Query: 1129 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKV 1188
            Y   I G++ AI    KH+ + GDS LV NQ++G W+  + N+      A+ L   F   
Sbjct: 2    YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181

Query: 1189 ELHHIPRDENQMADALATLSSMFRVNHWNDV 1219
            +++HIPR+ N  AD  A      R     +V
Sbjct: 182  KINHIPREYNSEADVQANFGISLRAGQVEEV 274


>TC18698 
          Length = 808

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = -2

Query: 732 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 791
           ++KT+       + Y+VMP GL N   TYQR M  +FH  I K VEVYV+DMIVKS+ E 
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628

Query: 792 QH 793
            H
Sbjct: 627 FH 622


>AV410603 
          Length = 162

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = +1

Query: 692 KDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWG 742
           KD+FP+P +D L+D     + FS +D  SGY+QI + PEDR KT F T  G
Sbjct: 10  KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162


>BP067981 
          Length = 334

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = -2

Query: 65  SNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAH 104
           S +D ++ ++ RSD+ +VD+  QT  K +VL LLL++  +
Sbjct: 192 SAIDLVVVVVARSDFNVVDE-NQTEEKGTVLLLLLTTTTY 76


>TC16956 homologue to UP|Q9FJH0 (Q9FJH0) GTP-binding protein, ras-like
           (At5g60860), partial (44%)
          Length = 584

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -2

Query: 138 NLWFGEDELPEVGKCHNLALH---ISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRE 194
           ++WFG +ELP     +    H   ++    S + + ++   G +    P S++  L+ R 
Sbjct: 343 DMWFGSEELPFYSLSNYAEQHPTFLTAETSSLLPTLIVCPLGKAAGSSPISSVFLLTTRY 164

Query: 195 IPLRRSTFLVKAFDGSRKNV 214
           I +R S   +  F  SR  V
Sbjct: 163 I*VRTSVKALSTFKDSRAEV 104


>TC17862 
          Length = 545

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/63 (26%), Positives = 29/63 (45%)
 Frame = +2

Query: 962  ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLS 1021
            E  YTM  +  C L     +++ +L+ H  WL+    P ++I     VT     W+M  S
Sbjct: 23   EDDYTMKRRLGCHL-----QVQIHLLRHLLWLLRHFLP*RHIRMMHLVTSCTLLWKM*CS 187

Query: 1022 EYD 1024
             ++
Sbjct: 188  SFE 196


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,155,564
Number of Sequences: 28460
Number of extensions: 346677
Number of successful extensions: 1634
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of query: 1391
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1289
effective length of database: 1,994,680
effective search space: 2571142520
effective search space used: 2571142520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)