TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145219.5 + phase: 0 
         (130 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19781 similar to UP|AAQ73526 (AAQ73526) Early flowering 4, par...   150  7e-38
TC18380                                                                81  7e-17
AV780902                                                               26  2.5
TC10936 weakly similar to UP|Q9C887 (Q9C887) Myosin-like protein...    25  3.3
TC15760 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respon...    25  3.3
TC11745                                                                25  3.3
TC19118 weakly similar to UP|Q84YE8 (Q84YE8) Expressed protein-l...    25  5.6

>TC19781 similar to UP|AAQ73526 (AAQ73526) Early flowering 4, partial (42%)
          Length = 543

 Score =  150 bits (379), Expect = 7e-38
 Identities = 72/93 (77%), Positives = 81/93 (86%)
 Frame = +1

Query: 38  DVEDAEDGDPEAWQTLNKSFRQVQSVLDRNRAIIQQVNENQQSRMPDNMVKNVGLIQELN 97
           + +D  DGD EAW T+NKSFRQVQSVLDRNR +IQQVNE QQSRMPDNMVKNV LIQELN
Sbjct: 19  EFDDTHDGDXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELN 198

Query: 98  GNISKVASLYSDLNSDFTNICHQQQRSSHNRGK 130
           GNISKV SLYSDLNS+F+N+C QQQR ++ RGK
Sbjct: 199 GNISKVVSLYSDLNSNFSNVCQQQQRFNNGRGK 297


>TC18380 
          Length = 664

 Score = 80.9 bits (198), Expect = 7e-17
 Identities = 34/80 (42%), Positives = 54/80 (67%)
 Frame = +1

Query: 36  YSDVEDAEDGDPEAWQTLNKSFRQVQSVLDRNRAIIQQVNENQQSRMPDNMVKNVGLIQE 95
           + ++ +    D    Q   KS  Q Q +L++NR +I ++N+N +S+MPDN+ +NVGLI+E
Sbjct: 88  FGELGNTSQVDSRVMQVFQKSLLQAQDILNQNRVLINEINQNHESKMPDNLSRNVGLIKE 267

Query: 96  LNGNISKVASLYSDLNSDFT 115
           LN NI +V  LY+D++S FT
Sbjct: 268 LNSNIRRVVDLYADISSSFT 327


>AV780902 
          Length = 506

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +1

Query: 20  KNQRRRRPSATPTNNDYSDVEDAEDGDP 47
           + ++R R S  P   DY  ++D   GDP
Sbjct: 313 QGKKRTRTSLAPCKRDYCLIDDRSCGDP 396


>TC10936 weakly similar to UP|Q9C887 (Q9C887) Myosin-like protein, partial
           (14%)
          Length = 586

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 67  NRAIIQQVNENQQSRMPDNMVKNVGLIQELNGN 99
           N+  I Q   N  SR+PDNM  +V        N
Sbjct: 474 NKTYICQFRTNNISRIPDNMAMHVACTHRRTSN 376


>TC15760 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
           protein, partial (17%)
          Length = 664

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -3

Query: 2   STLYSPSSAMEDTNHRSK 19
           S +Y PS +ME TNH S+
Sbjct: 542 SNMYKPSKSMEITNHYSQ 489


>TC11745 
          Length = 440

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (55%)
 Frame = +2

Query: 7   PSSAMEDTNHRSKKNQRRRRPSA 29
           P     D N R++KN  RRRP A
Sbjct: 245 PQRTDRDRNRRARKNVARRRPVA 313


>TC19118 weakly similar to UP|Q84YE8 (Q84YE8) Expressed protein-like
           protein, partial (11%)
          Length = 932

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 7   PSSAMEDTNHRSKKNQRRRRPSATPTNNDYSDVEDAEDGDPE 48
           P+ A E+T      ++  R    TP+ N        +DG+ E
Sbjct: 732 PTIAAEETRDEDGDDETNREEPQTPSKNICKSSNSLDDGEEE 857


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.309    0.123    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,826,055
Number of Sequences: 28460
Number of extensions: 17512
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of query: 130
length of database: 4,897,600
effective HSP length: 80
effective length of query: 50
effective length of database: 2,620,800
effective search space: 131040000
effective search space used: 131040000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)