TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145219.13 - phase: 0 /pseudo
         (702 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041113                                                               61  5e-10
AV414139                                                               56  2e-08
BP056597                                                               52  4e-07
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro...    47  8e-06
AV428268                                                               45  3e-05
AV412895                                                               43  1e-04
TC13572                                                                41  6e-04
AV411435                                                               41  7e-04
BP052318                                                               30  1.0
TC11224 weakly similar to UP|Q8S996 (Q8S996) Glucosyltransferase...    30  1.0
BP028574                                                               30  1.3
TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, parti...    30  1.3
TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein (...    29  2.9
AV774197                                                               28  3.8
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop...    28  6.5
AV774104                                                               27  8.5

>BP041113 
          Length = 503

 Score = 61.2 bits (147), Expect = 5e-10
 Identities = 48/142 (33%), Positives = 60/142 (41%), Gaps = 8/142 (5%)
 Frame = +1

Query: 551 CLILGGRMEEGAW----NWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDV 606
           C++  G    G W    +WRR L   E   +E   K L+GV L   + D+WLW       
Sbjct: 85  CILECGGWNHGVWTWKLSWRRALVGRELGWLELMMKDLSGVCLSEGVEDKWLWLPGG--T 258

Query: 607 YTVRGAYQIL---TTMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRG- 662
           YTV  AY  L   T  D  PI      +W    P  V   AW  L  RLPT  NL++R  
Sbjct: 259 YTVNSAYSFLQAPTLADTDPIFAT---IWRTVAP-SVKAFAWRCLLGRLPTYDNLIKRQV 426

Query: 663 CLDVEAAGCADGCGIAETANHL 684
            +D     C    G  E+  HL
Sbjct: 427 VVDPAMTVCKFCQGEVESVTHL 492


>AV414139 
          Length = 309

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = -2

Query: 556 GRMEEGAWNW----RRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRG 611
           G+   G W W    RR L V E+    +  + L GV LQ    DRW W  + +D+YTVR 
Sbjct: 296 GQWHNGVWEWEFRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIYTVRS 117

Query: 612 AYQILTTMDDPPIVGVGDLVWHKQVPLKVSIMAWCLL 648
           AY +L          V + VW    P   +   W LL
Sbjct: 116 AY*LLLDPIADSDSEVYEKVWVGIAPSNANAFVWRLL 6


>BP056597 
          Length = 414

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
 Frame = +3

Query: 564 NWRRPLWVWE---------EELVE--ECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGA 612
           +W    WVW+         E++++    +++++   L +   D W+W    D  Y+V+ A
Sbjct: 66  HWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLINGKKDTWVWILEGDGQYSVKSA 245

Query: 613 YQILTTMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRR 661
           Y +L+ +D    + V   +W    P     + W +  DR+ TK NL RR
Sbjct: 246 YDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVFLDRIQTKDNLSRR 392


>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
           partial (10%)
          Length = 879

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = -1

Query: 549 QICLILGGRMEEGAWNW----RRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNND 604
           ++ L LG R+E G W W    RR     E  LV +   LL  V L  D +D W W +N +
Sbjct: 807 ELILNLGKRVE-GVWTWSFIRRRNPSTRENLLVADLCNLLESVPLSEDTNDSWSWTANPE 631

Query: 605 DVYTVRGAYQILTTMDDPPIVGVGDLVW 632
             YTV+ AY+ L    +     +   VW
Sbjct: 630 GQYTVQTAYKFLRASSNEFTDPIFHFVW 547


>AV428268 
          Length = 429

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +3

Query: 607 YTVRGAYQILTTMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDV 666
           Y+V+ AY  L    +     +  L+W  +VP     ++W +L +R+ TKVNL RRG   V
Sbjct: 6   YSVKSAYDFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRG---V 176

Query: 667 EAAGCADGCGI-AETANHLFLHCTTFGAVWQHI 698
             +     C +  E+ +HL   C     +W  I
Sbjct: 177 VISNVCPLCSLDEESTDHLLFSCPIV*RIWSKI 275


>AV412895 
          Length = 405

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
 Frame = +1

Query: 631 VWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAE-TANHLFLHCT 689
           +W    PL +    W +L  R+ T+ NL++R  +          CG+AE + +HL   C 
Sbjct: 82  IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261

Query: 690 TFGAVWQHIRAWI 702
               +W    AW+
Sbjct: 262 ESMLIWYECFAWL 300


>TC13572 
          Length = 534

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 556 GRMEEGAWNW----RRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRG 611
           G   +G WNW    RRPL   E + ++     +  V L + + D+W+W+ + D  Y+V  
Sbjct: 229 GGWSQGVWNWDFRWRRPLAGRELDWLQALSLDIVRVPLLAGVPDKWVWKPSEDGSYSVNS 50

Query: 612 AYQILTTMDDPP 623
           A+  L    + P
Sbjct: 49  AFIFLQVPSEQP 14


>AV411435 
          Length = 426

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 33/115 (28%), Positives = 41/115 (34%), Gaps = 14/115 (12%)
 Frame = +3

Query: 595 DRWLWESNNDDVYTVRGAYQI----------LTTMDDPPIVGVGDLVWHKQVPLKVSIMA 644
           DR  W       Y+V+  Y+           L +    P   +   +W  QVP KV    
Sbjct: 39  DRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFL 218

Query: 645 WCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIA----ETANHLFLHCTTFGAVW 695
           W    + +P K NL RR        G  D C I     E  NH  L C    AVW
Sbjct: 219 WRAANNAIPVKRNLKRRN------MGRDDFCPICNKGPEDINHALLACEWTRAVW 365


>BP052318 
          Length = 460

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -2

Query: 555 GGRMEEGAWNWRRPLWVWEEELVEECRKLLNGVVL----QSDISD--RWLWE 600
           GG  EE A  WR  + V   EL+ E R +L  + L     S+ISD  RW+WE
Sbjct: 192 GGGGEEVAVMWRGGVGVTVHELLAEVRTVLELLRLFFFHGSEISDADRWVWE 37


>TC11224 weakly similar to UP|Q8S996 (Q8S996) Glucosyltransferase-13
           (Fragment), partial (19%)
          Length = 596

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 448 VGECWWIEVVFGIGCWW 464
           V + WW+E+ FG+  WW
Sbjct: 92  VSDTWWLELSFGVHSWW 142


>BP028574 
          Length = 454

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = +3

Query: 585 NGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDPPIVGVGDLVWHKQVPLKVSIMA 644
           N  VL  +  D W+W  +    +TV+ AY+ L              +W  + P     +A
Sbjct: 231 NVKVLSINHRDSWVWIKDGSGSFTVKSAYEELHGEIQEIEDNFFRKLWQSKAPSNSIALA 410

Query: 645 WCLLRDRLPTKVNL 658
           W +  +R+P    L
Sbjct: 411 WRVGLNRVPCMAEL 452


>TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (89%)
          Length = 1130

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
 Frame = -1

Query: 546 VWWQICLILGGRMEEGAWNWRRPLWVWEEE----LVEECRKLLNGVVL 589
           VWW        R   G+W WR   WVWE      L  E R+ L    L
Sbjct: 176 VWW--------REG*GSWGWRERWWVWERRGV*GLASERREKLQNTPL 57


>TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein
           (At2g30010/F23F1.7), partial (12%)
          Length = 555

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 325 HFCIWVFLLVVIRRG*HFGSLC 346
           H C+ VFLL+++  G*HF  LC
Sbjct: 443 HGCLGVFLLLMLSDG*HFA*LC 508


>AV774197 
          Length = 450

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 566 RRPLWVWEEELVEE-CRKL 583
           R+PLWVW  EL+ + CRK+
Sbjct: 369 RQPLWVWMHELLNQ*CRKM 425


>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
           (HRGP) (Fragment), partial (57%)
          Length = 941

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
 Frame = -3

Query: 547 WWQICLILGGRMEEGAW-------NWRRPLWVW 572
           WW    ++ GRM  G W        WRR  W W
Sbjct: 348 WWWRGFVVVGRMRNGRWWRRTFVVVWRRWRWRW 250


>AV774104 
          Length = 415

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 281 FCICLRGCLACE*IFIRVCWLELISRILG*MRPSLF 316
           + IC+  CLA  * +  +C LE +    G + PS++
Sbjct: 129 YLICIFLCLAIV*CYCNLCQLETVVIFFGLLAPSIY 22


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.363    0.165    0.639 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,773,671
Number of Sequences: 28460
Number of extensions: 220945
Number of successful extensions: 2764
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 2145
length of query: 702
length of database: 4,897,600
effective HSP length: 97
effective length of query: 605
effective length of database: 2,136,980
effective search space: 1292872900
effective search space used: 1292872900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 58 (26.9 bits)