TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145202.5 - phase: 0 /pseudo
         (1053 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN824974                                                              219  2e-57
TC17370 similar to UP|Q8LGE7 (Q8LGE7) NADH:ubiquinone oxidoreduc...    30  2.0
CB827382                                                               29  3.4
TC10121 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2  (S...    29  4.4
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),...    28  9.8
BP053615                                                               28  9.8

>CN824974 
          Length = 723

 Score =  219 bits (557), Expect = 2e-57
 Identities = 129/240 (53%), Positives = 165/240 (68%), Gaps = 15/240 (6%)
 Frame = +3

Query: 793  DGLVERINEQTFRIKELPIRMWTEDYKKFLEKITARG------LIESFRQKGDYEIVNFK 846
            +G VE I+EQ+FRI ELPIR WT+DYK+FLE IT         LIE FRQ GD  +V+ +
Sbjct: 12   EGTVEEIDEQSFRITELPIRKWTQDYKQFLESITDGSPNVKDPLIEDFRQNGDDAMVDIE 191

Query: 847  VNVKQEEIATIEKDEELRKKFNLTCTISTSNMYLFDAEGKIKKYNTPEQILEEFCTLRLK 906
            + +K E+IA I + E L KKF LT TISTSNM+LFDAEGKIKKY  PEQILEEF  LRL 
Sbjct: 192  IRMKLEKIAMIMQ-EGLLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLD 368

Query: 907  YYVRRKQYLVKNFTQLLRSLRIKQKFISNIVNEKFNPINR-RAELLIEIL--------KK 957
            YY RRKQY+++NF +LL  L  K +FI  +V+ +    NR +A+LL+E+         KK
Sbjct: 369  YYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSNRKKADLLMELQQKGFTPMPKK 548

Query: 958  GKSAEPHVAGAIDYSSKEQEAGEQESVSQSVSIEGATLGDYEYLSSLPFENFTLESLKKL 1017
            GKSAEP VAGA D +S+EQE  ++ +  ++V +E A  GDYEYL S+     TLES++KL
Sbjct: 549  GKSAEPQVAGANDENSEEQE--DENTREEAVRVEEAKRGDYEYLLSMSIGTLTLESVQKL 722


>TC17370 similar to UP|Q8LGE7 (Q8LGE7) NADH:ubiquinone oxidoreductase-like
           protein (At5g18800), partial (88%)
          Length = 566

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
 Frame = -1

Query: 904 RLKYYVRRKQYLVK----NFTQLLRSLRIKQKFISNIVNEKFNPINRRAELLIEILKKGK 959
           RL+YY R +QY++      F +       + KFI  +V+     I+    LL+ IL+K K
Sbjct: 326 RLRYYFR*QQYIISFQRTLFLKCFLLFTTQIKFICMVVHAANVIIHLFRALLV*ILQKAK 147

Query: 960 SAEPHVAGAID 970
               +VA  I+
Sbjct: 146 DTASNVAAFIE 114


>CB827382 
          Length = 559

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +1

Query: 997  DYEYLSSLPFENFTLESLKKLEAELDEKENELKTL 1031
            +YE+L  LP    T ESLKKL+A   EKE EL  L
Sbjct: 10   NYEHL--LPMCTLTFESLKKLQA---EKEKELDNL 99


>TC10121 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2  (Sucrose-UDP
           glucosyltransferase 2) , partial (41%)
          Length = 996

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
 Frame = +2

Query: 829 GLIESFRQKGDY-EIVNFKV-----NVKQ----EEIATIEKDEELRKKFNL 869
           GL+ES+ +     E+VN  +     +VK+    EEIA IEK  EL K +NL
Sbjct: 704 GLVESYAKNNKLRELVNLVIVAGYIDVKKSRDREEIAEIEKMHELMKNYNL 856


>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
           (79%)
          Length = 1017

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 22/79 (27%), Positives = 39/79 (48%), Gaps = 12/79 (15%)
 Frame = -2

Query: 64  WTGWK*TLFLRLMRFMFT*KVFHF*AM-----------KHLIM*SKSFIPRIFTRLI-VM 111
           W GW+* + +RLM + +  +V H+  +             L++  +  + R + R++ V 
Sbjct: 320 WWGWR*WVLVRLMWWWWWWRVVHWVWLLVWWRWRVVHWVRLLVWWRW*VNRWWWRVVGVR 141

Query: 112 LRLLMDRGFGVSLCDNGKW 130
           LR    RG GV +C N +W
Sbjct: 140 LRRRWRRGIGVVVC*NFRW 84


>BP053615 
          Length = 460

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (53%)
 Frame = -2

Query: 392 KLFKKKEIQNLMAILGLVRNKKYSNAKCLRYGQLMVMANQDEDG 435
           K+  K+EI  +M I GL++ K      C+RY  L  +  +++ G
Sbjct: 342 KISFKQEISEVMHIHGLIKLKWSFICICMRYALLYTLLREEDFG 211


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,521,352
Number of Sequences: 28460
Number of extensions: 211723
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of query: 1053
length of database: 4,897,600
effective HSP length: 100
effective length of query: 953
effective length of database: 2,051,600
effective search space: 1955174800
effective search space used: 1955174800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)