BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145202.1 - phase: 0
(383 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV772161 172 1e-43
TC14919 similar to UP|Q7XYW3 (Q7XYW3) Seed specific protein Bn15... 162 1e-40
TC10461 homologue to UP|BAD11346 (BAD11346) BRI1-KD interacting ... 81 3e-16
AV410973 67 4e-12
BP039736 53 1e-07
TC10407 48 3e-06
BP048997 34 0.047
TC8558 weakly similar to UP|Q9NDI0 (Q9NDI0) 200 kDa antigen p200... 30 0.51
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 30 0.88
TC14493 29 1.1
AV777541 29 1.5
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 29 1.5
TC19240 similar to UP|Q94BY4 (Q94BY4) AT5g35570/K2K18_1, partial... 28 2.6
TC9348 28 2.6
AW719663 28 3.3
TC15506 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich prote... 28 3.3
TC11403 similar to UP|Q9XI56 (Q9XI56) F9L1.7 protein, partial (14%) 28 3.3
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 27 4.4
AV408651 27 4.4
BP042388 27 5.7
>AV772161
Length = 523
Score = 172 bits (435), Expect = 1e-43
Identities = 90/141 (63%), Positives = 104/141 (72%), Gaps = 21/141 (14%)
Frame = +2
Query: 8 ICIIKEPDRVVVYSDGISQDSGHETGTDNHNMTESYEHINETTEHHSSEESTKEYEVKEC 67
ICIIKEPD V+VYSDGIS+D GHE+ D+HN+TESYEH NE TEHHSSEESTKEYEVKEC
Sbjct: 107 ICIIKEPDSVIVYSDGISRDLGHESA-DHHNITESYEHFNENTEHHSSEESTKEYEVKEC 283
Query: 68 TTEVSVKAPDVSNIRKSEEKLTPDFEGVLNAKSSKPHKTRGNHKPRDT------------ 115
TTEVSV +VS I ++ EKL DFEGV++ KSS+ HKTRGNHKP+DT
Sbjct: 284 TTEVSVTTSNVSTI-ETREKLPSDFEGVISEKSSQSHKTRGNHKPQDTGKHGSRPSAGNL 460
Query: 116 ---------VKPTVPRPFSLA 127
V+PTVP+PFSLA
Sbjct: 461 HSRKAGGVQVRPTVPQPFSLA 523
>TC14919 similar to UP|Q7XYW3 (Q7XYW3) Seed specific protein Bn15D14A
(Fragment), partial (23%)
Length = 634
Score = 162 bits (409), Expect = 1e-40
Identities = 86/139 (61%), Positives = 102/139 (72%)
Frame = +1
Query: 244 EKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGR 303
EKNQNE R+KEE EEAIKQLR+SL FKASPMP+FYHEGPPPKV+LKK PPTRAKSPKLGR
Sbjct: 1 EKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKLGR 180
Query: 304 RKSNSGAVYSSEGVKEKGAAAQRKHRTSNTNNCNLSDVTNGSGLDGLMSKTENETEHTKL 363
RKSN+GA+ EG KEK A AQ+KH T TN+ SDV + S L N+ HT
Sbjct: 181 RKSNNGAIKLGEGDKEKKAVAQQKHHTLKTNDYGRSDVNDESSTYDL----NNKANHT-- 342
Query: 364 IEEINMIKANGQAGIEISS 382
+++N+IK G A +E +S
Sbjct: 343 -QDVNVIKVTG*ADLENNS 396
>TC10461 homologue to UP|BAD11346 (BAD11346) BRI1-KD interacting protein 118
(Fragment), partial (7%)
Length = 636
Score = 81.3 bits (199), Expect = 3e-16
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +1
Query: 252 SKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNS 308
SKE +E IK+LR+SL FKA+PMPSFY E PPPKV+LKK+P TRA+SPKLGR K+++
Sbjct: 16 SKENQEAEIKKLRKSLAFKAAPMPSFYKE-PPPKVELKKIPTTRARSPKLGRHKASA 183
>AV410973
Length = 270
Score = 67.4 bits (163), Expect = 4e-12
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +2
Query: 217 SFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKF 269
SF+ ERA+RRKEFY+KLEEK QA EAEK +A+SKE +E IK LR+SL F
Sbjct: 110 SFKCGERAERRKEFYTKLEEKIQAKEAEKTNMQAKSKETQEAEIKMLRKSLTF 268
>BP039736
Length = 455
Score = 52.8 bits (125), Expect = 1e-07
Identities = 37/95 (38%), Positives = 53/95 (54%), Gaps = 1/95 (1%)
Frame = -2
Query: 220 STERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYH 279
S RA R EF +++ EK ME K + E + K E+EE I++LRR L KA PMP Y
Sbjct: 409 SDVRAVDRAEFDNQVAEKLSLMEQYKLEKERQQKLEEEEEIRRLRRELVPKAQPMP--YF 236
Query: 280 EGP-PPKVDLKKLPPTRAKSPKLGRRKSNSGAVYS 313
+ P P+ +K PT ++PK ++ S A +S
Sbjct: 235 DRPFIPRRSMKN--PTMPRTPKFHKKIKCSSASWS 137
>TC10407
Length = 484
Score = 47.8 bits (112), Expect = 3e-06
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +1
Query: 233 KLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLP 292
K++EK+ + + ++EA E+E+A+KQLRR++ A P+P F H P K +
Sbjct: 4 KIKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKE--- 174
Query: 293 PTRAKSPKL------GRRKSNSGAVYSS 314
T+ KSP L RRK +G V SS
Sbjct: 175 ATKPKSPNLRVLKRRERRKVFNGTVVSS 258
>BP048997
Length = 422
Score = 33.9 bits (76), Expect = 0.047
Identities = 24/76 (31%), Positives = 39/76 (50%)
Frame = -1
Query: 304 RKSNSGAVYSSEGVKEKGAAAQRKHRTSNTNNCNLSDVTNGSGLDGLMSKTENETEHTKL 363
RKS+ GA+ EG +EK A AQ K T++ S+V + + L ++ HT
Sbjct: 422 RKSHHGAIKLGEGDQEKKAVAQPKPHPLETHDYGRSEVNDETRTYDL----NHQAHHT-- 261
Query: 364 IEEINMIKANGQAGIE 379
++N+I+ G A +E
Sbjct: 260 -PDVNVIQVTG*ADLE 216
>TC8558 weakly similar to UP|Q9NDI0 (Q9NDI0) 200 kDa antigen p200
(Fragment), partial (4%)
Length = 585
Score = 30.4 bits (67), Expect = 0.51
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +1
Query: 225 QRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQ--LRRSLKFKASPMPSFYHEGP 282
QRR+E E +A K + EAR +E +E A KQ L + + KA + +GP
Sbjct: 130 QRREEQERLAREAAEAERKRKEEEEAREREAREAAEKQAALAKIRQQKAESLGEEPAKGP 309
Query: 283 PPKVDLKKLPPTRAKSPKLGRRKSNSGAVYS 313
L + P K RR +N+ + S
Sbjct: 310 NVTQVLVRFPTGERKE----RRFNNTVTIQS 390
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 29.6 bits (65), Expect = 0.88
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Frame = +2
Query: 165 KQNQLKTPLVPRKPLKPDNKKHSDEDDSCSVASGTATSVKSFKSRATVASAPSFRSTERA 224
++ + + +VP+ +P+ K+ E++ + G K + A E A
Sbjct: 23 RRTKKQAKIVPQPEPEPEKKEEGKEEEKPAAEEGKPEEKKEEEKAA-----------EEA 169
Query: 225 QRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEE----AIKQLRRSLKFKASPMPSFYHE 280
++ + K + K+ EK E + + +KEE A+ + L K +Y++
Sbjct: 170 KKEEGGEEKNDNKE-----EKGGEEGKEEGKKEENNNGAVVNMEEELSMKRM---MYYYQ 325
Query: 281 GPPPKVDLKKLPP 293
PP V ++++PP
Sbjct: 326 YPPLYV-IERMPP 361
>TC14493
Length = 1214
Score = 29.3 bits (64), Expect = 1.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -1
Query: 303 RRKSNSGAVYSSEGV----KEKGAAAQRKHRTSNTNNCNLSDVTNG-SGLDGLMSKTENE 357
+RK+ + S G+ K K A+ H N NL + G SG DG+ + NE
Sbjct: 359 KRKAFVKTISQSNGISNNFKLKRQHAETSHALMLQNLQNLREFDGGGSGDDGVTEEFGNE 180
Query: 358 TEHTKLIEEINM 369
E L+ E++M
Sbjct: 179 REQAILVREVSM 144
>AV777541
Length = 466
Score = 28.9 bits (63), Expect = 1.5
Identities = 17/37 (45%), Positives = 25/37 (66%)
Frame = +1
Query: 236 EKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKAS 272
E+++ +EAEK Q A + +KEEA Q+RR + KAS
Sbjct: 115 ERRKLIEAEKLQRLAEMQRKKEEA--QIRREEERKAS 219
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 212 VASAPSFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEE-KEEAIKQLRRSLKFK 270
V+ P+ ++ + +KE K EEK+ ++E+ Q E KEE K+E K+ + + K
Sbjct: 3 VSVGPAKEPEKKEEPKKEEPQKEEEKKDEPKSEEPQKEEAKKEEPKKEEEKKDEKKEEEK 182
Query: 271 ASPMPS 276
P+
Sbjct: 183 KKEQPA 200
>TC19240 similar to UP|Q94BY4 (Q94BY4) AT5g35570/K2K18_1, partial (12%)
Length = 554
Score = 28.1 bits (61), Expect = 2.6
Identities = 23/94 (24%), Positives = 32/94 (33%)
Frame = +2
Query: 266 SLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNSGAVYSSEGVKEKGAAAQ 325
SLK + E P PK LK + S ++ G + G +
Sbjct: 2 SLKLSPHIHQEYEEEPPSPKQSLKHSSLMASFSDSNHHHNTSDGVAQRVNSPRFSGPMTR 181
Query: 326 RKHRTSNTNNCNLSDVTNGSGLDGLMSKTENETE 359
R H NN N + + S +S T NE E
Sbjct: 182 RAHSFKRNNNNNNGNNSGNSSNSNSLS-THNEVE 280
>TC9348
Length = 1139
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = -3
Query: 295 RAKSPKLGRRKSNSGAVYSSEGVKEKGAAAQRKHRTSNTNNCNLSDVTNGSGLDGLMS-- 352
RA K GR+K+N +S + ++ A R+H+T++ C + S LD +M
Sbjct: 1041 RAPGEKTGRKKNNHIMHCNSRRLSKEKKKATRRHKTTS*CACPICQCV--SQLDSIMPIQ 868
Query: 353 ---KTENETEHTK 362
T N+ HT+
Sbjct: 867 IIIST*NQKIHTR 829
>AW719663
Length = 474
Score = 27.7 bits (60), Expect = 3.3
Identities = 21/84 (25%), Positives = 35/84 (41%)
Frame = +1
Query: 300 KLGRRKSNSGAVYSSEGVKEKGAAAQRKHRTSNTNNCNLSDVTNGSGLDGLMSKTENETE 359
+LGR+ N + E+ +H+ + + + S LD + S ENE E
Sbjct: 94 RLGRKDLNP--------LVEETTVVDARHKEQDEESEHESKTEEQINLDEVNSVDENEPE 249
Query: 360 HTKLIEEINMIKANGQAGIEISSQ 383
H E I + ANG E+ ++
Sbjct: 250 HKPEEEHIKLDDANGVDENEVENK 321
>TC15506 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein, partial
(24%)
Length = 677
Score = 27.7 bits (60), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (57%), Gaps = 4/31 (12%)
Frame = +2
Query: 282 PPPKVDLKKLPPTRAKSP----KLGRRKSNS 308
PPP + PP RA+SP +GRR+S S
Sbjct: 47 PPPPPRRRSPPPRRARSPPRRSPIGRRRSRS 139
>TC11403 similar to UP|Q9XI56 (Q9XI56) F9L1.7 protein, partial (14%)
Length = 380
Score = 27.7 bits (60), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +3
Query: 283 PPKVDLKKLPPTRAKSPKLGRRKSNSGA 310
PP L++LP RA+ PK RR N A
Sbjct: 93 PPPPQLRRLPLLRARGPKHRRRSPNPKA 176
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 27.3 bits (59), Expect = 4.4
Identities = 28/118 (23%), Positives = 51/118 (42%)
Frame = +3
Query: 222 ERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEG 281
++ RKE K E+K +A A K + +A ++E K +A K +R+ S S Y
Sbjct: 273 KKIMERKEAPLKWEQKLEA--AAKAKADAEARERKLKAAKHKKRA----DSDSESDYDSD 434
Query: 282 PPPKVDLKKLPPTRAKSPKLGRRKSNSGAVYSSEGVKEKGAAAQRKHRTSNTNNCNLS 339
K ++ + RK + Y S+ K K ++RK + ++ + + S
Sbjct: 435 DESK-----------RTSRRSHRKHKKRSHYDSDHEKRKEKLSKRKTKKWSSESSDFS 575
>AV408651
Length = 405
Score = 27.3 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 17/39 (42%)
Frame = -3
Query: 20 YSDGISQDSGHETGTDNHNMTESYEHINETTEHHSSEES 58
++D I DSGH TD E HI +HH S
Sbjct: 118 HTDKIHHDSGHVQSTD*CKQIELELHITGPRDHHICNHS 2
>BP042388
Length = 543
Score = 26.9 bits (58), Expect = 5.7
Identities = 12/46 (26%), Positives = 23/46 (49%)
Frame = -2
Query: 238 QQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPP 283
++ ++A Q E++ ++ + K+ +R K P YH GPP
Sbjct: 212 KRKIKARSQQKESQDPPKETDLRKERKRKEGKKEVDFPRPYHRGPP 75
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.305 0.123 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,460,667
Number of Sequences: 28460
Number of extensions: 71697
Number of successful extensions: 410
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of query: 383
length of database: 4,897,600
effective HSP length: 92
effective length of query: 291
effective length of database: 2,279,280
effective search space: 663270480
effective search space used: 663270480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC145202.1