TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145157.11 + phase: 0 
         (74 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18077 similar to UP|Q8LBH4 (Q8LBH4) Ids4-like protein, partial...    26  1.6
BP055697                                                               25  2.7
AW720211                                                               25  2.7
AV768701                                                               25  3.5
BP049818                                                               25  3.5
AV772298                                                               24  6.1
AV414516                                                               24  6.1
BP055604                                                               24  6.1
BP072250                                                               23  7.9
AV420571                                                               23  7.9

>TC18077 similar to UP|Q8LBH4 (Q8LBH4) Ids4-like protein, partial (51%)
          Length = 995

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -2

Query: 48  PRDGFNLTLKINLSKVPANQGISG 71
           P   +NL LK++   VP NQ +SG
Sbjct: 289 PSPPYNLLLKVDCHLVPTNQVLSG 218


>BP055697 
          Length = 191

 Score = 25.0 bits (53), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 55 TLKINLSKVPANQGISGFLV 74
          T K+NLS +PA  GIS  L+
Sbjct: 14 TRKLNLSPLPARYGISSMLL 73


>AW720211 
          Length = 465

 Score = 25.0 bits (53), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 2   KNPNIFLLSVSLPTPSSETIFVCGL 26
           +NPN+F    S P   S+++F+ G+
Sbjct: 112 QNPNLFTTHFSNPNSPSKSLFILGV 186


>AV768701 
          Length = 292

 Score = 24.6 bits (52), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = -3

Query: 7   FLLSVSLPTPSSETIFVCGLPFGAIEAIKAAY 38
           FLL +++ T     IFVC LP   ++ +K  Y
Sbjct: 104 FLLLINVTT---NVIFVCALPTQIVKVLKLKY 18


>BP049818 
          Length = 604

 Score = 24.6 bits (52), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -3

Query: 1   MKNPNIFLLSVSLPTP 16
           +KNPN F++S   PTP
Sbjct: 548 IKNPNTFVVSSKYPTP 501


>AV772298 
          Length = 528

 Score = 23.9 bits (50), Expect = 6.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 6   IFLLSVSLPTPSSETIFV 23
           + L+ VSLPT + ETIFV
Sbjct: 289 LILILVSLPTYTLETIFV 236


>AV414516 
          Length = 424

 Score = 23.9 bits (50), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +1

Query: 5  NIFLLSVSLPTPSSET 20
          NIF+  VSLP PSS +
Sbjct: 1  NIFIFFVSLPPPSSSS 48


>BP055604 
          Length = 464

 Score = 23.9 bits (50), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 3   NPNIFLLSVSLPTPSSE 19
           +PN F LS+ +P+P  E
Sbjct: 208 SPNAFCLSIQMPSPQPE 158


>BP072250 
          Length = 444

 Score = 23.5 bits (49), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (45%)
 Frame = -2

Query: 27  PFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPA 65
           PF   E +K  Y   +     P+D   LTL + LS  P+
Sbjct: 410 PFRMHEFLKGQYPCALPNAPQPKDSLILTLLLTLSIEPS 294


>AV420571 
          Length = 304

 Score = 23.5 bits (49), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = +1

Query: 38  YGSLVQILDPPRDGFNL 54
           YGS+V+IL+PP    NL
Sbjct: 112 YGSVVRILNPPLTTTNL 162


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,315,178
Number of Sequences: 28460
Number of extensions: 14959
Number of successful extensions: 76
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 74
length of database: 4,897,600
effective HSP length: 50
effective length of query: 24
effective length of database: 3,474,600
effective search space: 83390400
effective search space used: 83390400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)