BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145109.3 - phase: 0
(190 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17592 similar to UP|OM20_SOLTU (P92792) Mitochondrial import r... 113 2e-26
TC11103 30 0.34
TC9008 homologue to PIR|T06773|T06773 ferredoxin-NADP reductase ... 27 2.2
TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete 27 2.2
AV766095 26 3.8
AV419061 25 6.5
TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragmen... 25 6.5
TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial... 25 6.5
BP056911 25 6.5
BP074866 25 6.5
TC18783 similar to UP|Q9FNN8 (Q9FNN8) Cleft lip and palate assoc... 25 8.5
>TC17592 similar to UP|OM20_SOLTU (P92792) Mitochondrial import receptor
subunit TOM20 (Translocase of outer membrane 20 kDa
subunit), partial (58%)
Length = 482
Score = 113 bits (282), Expect = 2e-26
Identities = 61/123 (49%), Positives = 73/123 (58%)
Frame = +1
Query: 1 MDYPLRKFKFHLPMKHECILAEQRYNKNPHDAENLTRWGVALLRLSQAHSFPDSLHTIQV 60
MD +F L +H AE Y KNP DA+NLTRWG ALL LSQ SFPDS Q
Sbjct: 112 MDMQQSEFDRLLFFEHARKAAEAEYAKNPLDADNLTRWGGALLELSQFQSFPDSKKMTQE 291
Query: 61 SISKLEEAFSLNPNNPDVHWLLGMALTMQALLTPDSHDAKLHFDSADVYFKRAFRQDPSD 120
++SKLEEA +NP D W LG A T QA L PD +AK++FD A YF+ A +DP +
Sbjct: 292 AVSKLEEALVINPKKHDTLWCLGNAHTSQAFLIPDLEEAKVYFDKAAEYFQLAVEEDPEN 471
Query: 121 PTY 123
Y
Sbjct: 472 ELY 480
>TC11103
Length = 489
Score = 29.6 bits (65), Expect = 0.34
Identities = 16/45 (35%), Positives = 23/45 (50%)
Frame = +1
Query: 75 NPDVHWLLGMALTMQALLTPDSHDAKLHFDSADVYFKRAFRQDPS 119
NP VHWL +A Q+ T + H ++ S F + RQ+PS
Sbjct: 49 NPSVHWLQPVANVRQS--TTEQHGHRIRHVSLRGLFVKLLRQNPS 177
>TC9008 homologue to PIR|T06773|T06773 ferredoxin-NADP reductase - garden
pea (fragment) {Pisum sativum;} ,
partial (18%)
Length = 737
Score = 26.9 bits (58), Expect = 2.2
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 22 EQRYNKNPHDAENLTRWGVALLRLSQAHSFPDSLHTI-QVSISKLEEAFSLNPNNPDVHW 80
E+R +K + ++LT L SQ +FP TI QVS L +SLN NN + W
Sbjct: 309 EERKHKMSINNKSLTGGIKP*LCPSQ*GTFPP*SITI*QVSPGGLGSHYSLNRNNGGIWW 130
Query: 81 LLGMALTMQAL 91
A + +AL
Sbjct: 129 FRAGASSREAL 97
>TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete
Length = 1793
Score = 26.9 bits (58), Expect = 2.2
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +1
Query: 126 SLELPDTKDHEQHPKIVNHGLGQQSKGSSSATKVIKHYKFLV 167
S PDT + ++ G GQ+ +G SSA K K K L+
Sbjct: 1081 SASRPDTGSNPGPERVQGAGEGQKKRGRSSADKESKRLKRLL 1206
>AV766095
Length = 521
Score = 26.2 bits (56), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = -3
Query: 152 GSSSATKVIKHYKFLVFLFTLLVIGYQLP 180
G SSA++ Y+ V TL IGY +P
Sbjct: 216 GHSSASEAPNMYRLCVVFLTLSCIGYAMP 130
>AV419061
Length = 407
Score = 25.4 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -1
Query: 127 LELPDTKDHEQHPKIVN 143
L LPD K H+QH VN
Sbjct: 86 LHLPDDKSHQQHEHSVN 36
>TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment), partial
(16%)
Length = 550
Score = 25.4 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 6 RKFKFHLPMKHECILAEQRYNKNPHDAENLTR 37
R F H H CI+ +N HD LTR
Sbjct: 105 RSFDRHFFCFHLCIIVRSTFNSGLHDIYVLTR 10
>TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial (69%)
Length = 1578
Score = 25.4 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 6 RKFKFHLPMKHECILAEQRYNKNPHDAENLTR 37
R F H H CI+ +N HD LTR
Sbjct: 187 RSFDRHFFCFHLCIIVRSTFNSGLHDIYVLTR 92
>BP056911
Length = 312
Score = 25.4 bits (54), Expect = 6.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 167 VFLFTLLVIGYQLPNSQFSCILSW 190
++++ L +GY PNS + C W
Sbjct: 141 IYMYLYLTLGYGYPNSIYICCHVW 70
>BP074866
Length = 574
Score = 25.4 bits (54), Expect = 6.5
Identities = 19/62 (30%), Positives = 27/62 (42%)
Frame = +1
Query: 12 LPMKHECILAEQRYNKNPHDAENLTRWGVALLRLSQAHSFPDSLHTIQVSISKLEEAFSL 71
L ++H I R +P+ +L +ALL L Q H H Q S E A+S+
Sbjct: 376 LQLRHSVIHHHHRLEDHPYSVRSLLGEVLALLLLKQVHLEVPLNHHNQDS----EAAYSV 543
Query: 72 NP 73
P
Sbjct: 544 RP 549
>TC18783 similar to UP|Q9FNN8 (Q9FNN8) Cleft lip and palate associated
transmembrane protein-like, partial (20%)
Length = 406
Score = 25.0 bits (53), Expect = 8.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 106 ADVYFKRA-FRQDPSDPTYQ 124
A VYF + F DPSDP YQ
Sbjct: 133 AHVYFAHSGFSPDPSDPEYQ 192
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,786,184
Number of Sequences: 28460
Number of extensions: 51760
Number of successful extensions: 269
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of query: 190
length of database: 4,897,600
effective HSP length: 85
effective length of query: 105
effective length of database: 2,478,500
effective search space: 260242500
effective search space used: 260242500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC145109.3