BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145061.22 - phase: 0 /pseudo
(604 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP063694 60 8e-10
BP033602 36 0.016
AV766088 35 0.035
BP063902 31 0.65
BP055778 31 0.65
AV773564 30 0.85
AV773931 29 2.5
TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response facto... 28 3.2
AV780524 28 5.5
TC18069 homologue to UP|Q9SMD1 (Q9SMD1) SUMO protein, partial (81%) 27 7.2
TC14207 similar to UP|RK15_PEA (P31165) 50S ribosomal protein L1... 27 7.2
TC8108 homologue to UP|CAF02295 (CAF02295) Rho GDP dissociation ... 27 7.2
TC8751 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (31%) 27 9.4
>BP063694
Length = 511
Score = 60.5 bits (145), Expect = 8e-10
Identities = 35/119 (29%), Positives = 58/119 (48%)
Frame = -2
Query: 454 LWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTHRSKEV 513
LWH GH+N+ + L K L V + +P T + + R+ V
Sbjct: 360 LWHSRLGHVNFDIIKQL-HKHGCLDVSSI-LPKPICCTSCQMAKSKRLVFHDNNKRASAV 187
Query: 514 LNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFFVEKQ 572
L++++ D+ GP V S+ YF+ F+D+FS+ W +K KS D+ +FK F+E +
Sbjct: 186 LDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENR 10
>BP033602
Length = 533
Score = 36.2 bits (82), Expect = 0.016
Identities = 21/89 (23%), Positives = 43/89 (47%)
Frame = +3
Query: 454 LWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTHRSKEV 513
LWH GH N+ L HL + ++ ++ ++ K R + S H S+
Sbjct: 276 LWHNRLGHPNFQYLRHLFPD----LFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRP- 440
Query: 514 LNVVYFDVNGPLEVPSMGRIKYFISFLDE 542
+++ DV GP ++ + ++F++F+D+
Sbjct: 441 FYLIHSDVWGPSKITTQFGKRWFVTFIDD 527
>AV766088
Length = 501
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Frame = -3
Query: 454 LWHYMFGH-----LNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
LWH GH L Y+ N + E++ P + + + GK R F+S+ +
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCE-------SCVFGKHVRLPFVSSN-N 152
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAF 559
+ ++++ D+ + S G ++++ FLD+F+ +W + KS F
Sbjct: 151 VTVMPFDILHSDLWTSPVLSSAGH-RFYVLFLDDFTDFLWTFPLSNKSQVF 2
>BP063902
Length = 494
Score = 30.8 bits (68), Expect = 0.65
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = -3
Query: 452 SWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFIST 505
S +WH+ GH +LNHL + ++I P D+ ++GK R F S+
Sbjct: 189 SSVWHHRLGHPASSALNHLRNNKLIFCEPSRS--SSVCDSCVLGKHVRLPFSSS 34
>BP055778
Length = 574
Score = 30.8 bits (68), Expect = 0.65
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 205 CKFKLLIEMILLRRTSRKARITPREETGQNGRTKSLKMVNVQK 247
C K+ ++ + +R+ RK R+ +ETGQN + + VQK
Sbjct: 511 CVLKISLDKLYIRKWQRKCRVKQ*KETGQNLNFVDSRPIAVQK 383
>AV773564
Length = 396
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 443 LSAIVNNEDSWLWHYM-FGHLNYISLNHLVDKEMILVVPKLDIP 485
L I+N S + HY+ F HL IS N +DK ILV P L P
Sbjct: 158 LVMILNQH*SCISHYLLFSHLPNISRNSKLDKM*ILVCPYLQEP 27
>AV773931
Length = 452
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = +1
Query: 196 VVKDQFNNNCKFKLLIEMILLRRTSRKARITPREETGQNGRTKSLKMVNVQK 247
++ D C K+ + + +R+ RK R+ +ETGQN + + VQK
Sbjct: 169 IILDIVMCGCVLKISWDKLYIRKWQRKCRMKQ*KETGQNLNLVDSRPIAVQK 324
>TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response factor 6),
partial (6%)
Length = 659
Score = 28.5 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 490 DTRLIGKQPRTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGR 532
D L+G P F++ NV Y + PLEVP MGR
Sbjct: 95 DILLLGDDPWQEFVN----------NVSYIKILSPLEVPEMGR 193
>AV780524
Length = 525
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Frame = -2
Query: 502 FISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFS--KNIWVCLIK 553
FIS + ++L+V+ F GPL G I F++ F+ N+W C K
Sbjct: 416 FISNSLGLGNQLLDVLSF*FTGPLFYS*SGNIFNFVTISCIFTDFSNVWSCFSK 255
>TC18069 homologue to UP|Q9SMD1 (Q9SMD1) SUMO protein, partial (81%)
Length = 548
Score = 27.3 bits (59), Expect = 7.2
Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 7/82 (8%)
Frame = +3
Query: 217 RRTSRKARITPR---EETGQNGRTKS----LKMVNVQKDEVFIKTRRNVFIRRRINAIIV 269
RR R TP+ EE N ++ + LK+ +EVF + +RN +++ +NA
Sbjct: 24 RRRRRTMSGTPKASEEEKKPNDQSAAPHINLKVKGQDGNEVFFRIKRNTQLKKLMNAYCD 203
Query: 270 KSLPSMHLNAGLVKGRK*RMKR 291
+ ++ A L GR+ R ++
Sbjct: 204 RQSVELNSIAFLFDGRRLRAEQ 269
>TC14207 similar to UP|RK15_PEA (P31165) 50S ribosomal protein L15,
chloroplast precursor (CL15) (Fragment), partial (89%)
Length = 1201
Score = 27.3 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 440 LNCLSAIVNNED-SWLWHY-MFGHLNYISLNHLVDKEMILV 478
L C+ ++ N++ S + HY +F HL IS N +DK ILV
Sbjct: 1015 LKCILVMILNKN*SCISHYILFSHLQNISRNSKLDKM*ILV 1137
>TC8108 homologue to UP|CAF02295 (CAF02295) Rho GDP dissociation inhibitor
1, partial (28%)
Length = 599
Score = 27.3 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 20 VMKNLFGAKDLFNIVQNGYDELGENPTEMHRNAYKELKKK 59
++K L+ + VQN + LG T MHR K L +K
Sbjct: 515 ILKKLYIGSIHNSYVQNIFKHLGRKITVMHRKTIKHLDRK 396
>TC8751 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (31%)
Length = 598
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = +2
Query: 46 TEMHRNAYKELKKKDCKTLFFILLEETL*EFLNPQDQMKLGIFLNGTMKEMLR 98
T +H N+ + L+ + L F+LL E +PQ+Q K+GI L +K+ R
Sbjct: 44 TGIH*NSPERLQLH--RGLIFLLLLEVKDLLTHPQNQKKIGISLKRKLKKRRR 196
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.349 0.155 0.516
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,389,427
Number of Sequences: 28460
Number of extensions: 115954
Number of successful extensions: 971
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of query: 604
length of database: 4,897,600
effective HSP length: 96
effective length of query: 508
effective length of database: 2,165,440
effective search space: 1100043520
effective search space used: 1100043520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC145061.22