TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.17 + phase: 0 /pseudo/partial
         (50 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9098 similar to UP|O48844 (O48844) 26S proteasome regulatory s...    59  3e-11
TC8362 similar to UP|AAQ93035 (AAQ93035) Gibberellin 2-oxidase, ...    23  9.5

>TC9098 similar to UP|O48844 (O48844) 26S proteasome regulatory subunit,
           partial (27%)
          Length = 1097

 Score = 59.3 bits (142), Expect(2) = 3e-11
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = +3

Query: 1   MATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
           MATTLVSSAGGMLAMLNESH+SLK+HALS LN
Sbjct: 108 MATTLVSSAGGMLAMLNESHLSLKLHALSNLN 203



 Score = 22.3 bits (46), Expect(2) = 3e-11
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 33  IWSIASGQRSPQVSPS 48
           I S  SG RSP VSPS
Sbjct: 205 ISSTLSGPRSPPVSPS 252


>TC8362 similar to UP|AAQ93035 (AAQ93035) Gibberellin 2-oxidase, partial
           (20%)
          Length = 675

 Score = 23.5 bits (49), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 34  WSIASGQRSPQVSPSC 49
           WS   GQ +PQ  P C
Sbjct: 131 WSRFEGQNAPQTQPCC 84


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 786,598
Number of Sequences: 28460
Number of extensions: 6056
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 50
length of database: 4,897,600
effective HSP length: 26
effective length of query: 24
effective length of database: 4,157,640
effective search space: 99783360
effective search space used: 99783360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)