TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.14 - phase: 0 /pseudo
         (122 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8498 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16...   137  4e-34
TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S1...   131  3e-32
AV427141                                                               82  2e-17
BP037111                                                               26  2.2
BP072681                                                               25  4.8
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is...    24  6.3
TC8868 similar to UP|AAR06294 (AAR06294) Adenylosuccinate syntha...    24  6.3
TC11494 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, ...    24  8.3

>TC8498 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
           (Fragment), partial (97%)
          Length = 693

 Score =  137 bits (346), Expect = 4e-34
 Identities = 64/69 (92%), Positives = 69/69 (99%)
 Frame = +1

Query: 1   MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
           +EQVQCFGRKKNAVAVT+CKRGRGLIKINGCPIEL++PEILRFKA+EPILLLGRHRFAGV
Sbjct: 34  LEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGV 213

Query: 61  DMRIRVKGG 69
           DMRIRVKGG
Sbjct: 214 DMRIRVKGG 240


>TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
           (Fragment), partial (97%)
          Length = 808

 Score =  131 bits (330), Expect = 3e-32
 Identities = 63/69 (91%), Positives = 67/69 (96%)
 Frame = +1

Query: 1   MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
           MEQVQCFGRKKNAVAVT+CKRGRGLIKING PIEL+EPEILRFKA+EPILLLG+ RFAGV
Sbjct: 64  MEQVQCFGRKKNAVAVTYCKRGRGLIKINGSPIELIEPEILRFKAFEPILLLGKSRFAGV 243

Query: 61  DMRIRVKGG 69
           DMRIRVKGG
Sbjct: 244 DMRIRVKGG 270


>AV427141 
          Length = 286

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 41/58 (70%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4   VQCFGRKKNAVAVTHCKR-GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
           VQ FGRKK AVAV   K  G+GL+K+NGCPIEL+EPEILR K +EP+LLLG+ RFAGV
Sbjct: 112 VQVFGRKKTAVAVALIKGDGKGLMKVNGCPIELLEPEILRVKVFEPLLLLGQERFAGV 285


>BP037111 
          Length = 563

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 GSGGGKRYGRTRGGV 122
           G GGG+R GR  GG+
Sbjct: 385 GGGGGRRVGRRNGGI 341


>BP072681 
          Length = 461

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 38  PEILRFKAYEPILLLGRHRFAGVDMRIRVKGGVTL 72
           P  L    Y PILLL    F     ++R+K G +L
Sbjct: 167 PHNLHTHHYTPILLLSYASFYSPTFKLRLKEGASL 271


>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
           25331-24357 (At1g11090), partial (18%)
          Length = 552

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 108 GSGGGKRYGRTRGG 121
           GS GG+R GR RGG
Sbjct: 344 GSRGGRRSGRGRGG 303


>TC8868 similar to UP|AAR06294 (AAR06294) Adenylosuccinate synthase  ,
           partial (62%)
          Length = 1273

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
 Frame = -3

Query: 20  KRGRGLIKINGCPIEL----VEPEILRFKAYEPILLL 52
           +RGR ++  N CP+ L     EP+    K  EP L++
Sbjct: 584 RRGRPVVVPNSCPVNLRRSPPEPKFSVGKGPEPTLVV 474


>TC11494 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, partial
           (27%)
          Length = 541

 Score = 23.9 bits (50), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 109 SGGGKRYGRTRGG 121
           S GG+R+GR RGG
Sbjct: 220 SRGGRRWGRRRGG 182


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.147    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,474,228
Number of Sequences: 28460
Number of extensions: 14119
Number of successful extensions: 73
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of query: 122
length of database: 4,897,600
effective HSP length: 79
effective length of query: 43
effective length of database: 2,649,260
effective search space: 113918180
effective search space used: 113918180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)