BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144929.2 + phase: 0
(120 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV412895 45 4e-06
AV428268 42 2e-05
AU089037 37 0.001
AV411435 35 0.003
BP041113 29 0.25
AV777945 28 0.55
TC14839 weakly similar to UP|Q941F6 (Q941F6) Leucine-rich repeat... 27 0.71
BP056597 26 1.6
TC12488 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (47%) 26 2.1
AV418280 25 2.7
NP863984 CEN/TFL1-like GTP-associated binding protein [Lotus cor... 25 2.7
TC20217 25 2.7
TC11673 similar to UP|Q93XA7 (Q93XA7) NAC domain protein NAC1, p... 25 2.7
BP058043 25 3.5
AV776347 25 3.5
TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-li... 25 4.6
TC15254 25 4.6
TC11338 similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif lipase/hydrolas... 25 4.6
TC18127 24 6.0
TC11570 similar to UP|O22165 (O22165) 60S ribosomal protein L30 ... 24 6.0
>AV412895
Length = 405
Score = 44.7 bits (104), Expect = 4e-06
Identities = 28/102 (27%), Positives = 43/102 (41%), Gaps = 1/102 (0%)
Frame = +1
Query: 11 DVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCG-GLEIAQH 69
D N IW PL + WR++ R+ +DNL+ R + + CG E H
Sbjct: 64 DPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSH 243
Query: 70 LFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFAYLSGS 111
L SC W +WL + +A + H +QF+ + S
Sbjct: 244 LLFSCAESMLIWYECFAWLGVSTAQVSDPKVHLLQFSSIGRS 369
>AV428268
Length = 429
Score = 42.4 bits (98), Expect = 2e-05
Identities = 28/100 (28%), Positives = 42/100 (42%)
Frame = +3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W +VP L+W+++ NR+ K NL RG + + +C E HL SCP
Sbjct: 78 LWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVI--SNVCPLCSLDEESTDHLLFSCPI 251
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAYLSGSLQARR 116
W + + S P H +Q GSL R+
Sbjct: 252 V*RIWSKISE*FGVFSVFPNDSHGHFLQHLGSCGSLNFRK 371
>AU089037
Length = 245
Score = 36.6 bits (83), Expect = 0.001
Identities = 19/60 (31%), Positives = 26/60 (42%), Gaps = 1/60 (1%)
Frame = -1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGL-EIAQHLFLSCP 75
+W P AWRLI +R+ + NL R + + C E + HLF SCP
Sbjct: 191 LWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLFFSCP 12
>AV411435
Length = 426
Score = 35.0 bits (79), Expect = 0.003
Identities = 23/72 (31%), Positives = 30/72 (40%), Gaps = 4/72 (5%)
Frame = +3
Query: 14 TNFIWHK----QVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQH 69
++F+WH QVP KV WR N + +K NL R D C G E H
Sbjct: 156 SSFLWHTIWGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDD--FCPICNKGPEDINH 329
Query: 70 LFLSCPCFNSQW 81
L+C + W
Sbjct: 330 ALLACEWTRAVW 365
>BP041113
Length = 503
Score = 28.9 bits (63), Expect = 0.25
Identities = 22/72 (30%), Positives = 29/72 (39%), Gaps = 3/72 (4%)
Frame = +1
Query: 5 EKPAIADVTTNF--IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGC- 61
+ P +AD F IW P V AWR + RL DNL+ R + C
Sbjct: 289 QAPTLADTDPIFATIWRTVAP-SVKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQ 465
Query: 62 GGLEIAQHLFLS 73
G +E HL +
Sbjct: 466 GEVESVTHLLFA 501
>AV777945
Length = 279
Score = 27.7 bits (60), Expect = 0.55
Identities = 11/36 (30%), Positives = 18/36 (49%)
Frame = +1
Query: 15 NFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTL 50
+F+W + P LAW ++ +L KD L R +
Sbjct: 154 DFLWASKAPSNSLALAWNVLIKKLQTKDELRKRNVI 261
>TC14839 weakly similar to UP|Q941F6 (Q941F6) Leucine-rich repeat
receptor-like kinase F21M12.36, partial (6%)
Length = 565
Score = 27.3 bits (59), Expect = 0.71
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 3 TNEKPAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCG 62
TNE P I + N W K P + + +N+LL + + +G+ + + L + C
Sbjct: 200 TNEVPTIDSKSLNQFWRKTSPSSI*VTELVQRKNKLLEHEFWITKGSTTFIS*L*IVICK 379
Query: 63 GLEIA 67
L+ A
Sbjct: 380 *LDFA 394
>BP056597
Length = 414
Score = 26.2 bits (56), Expect = 1.6
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = +3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVR 47
+W P L WR+ +R+ KDNL R
Sbjct: 300 LWKACAPSNAVALGWRVFLDRIQTKDNLSRR 392
>TC12488 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (47%)
Length = 887
Score = 25.8 bits (55), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (49%), Gaps = 2/40 (5%)
Frame = -2
Query: 68 QHLFLSCPCFNSQWDLVRS--WLDICSADPYYLQKHDIQF 105
Q L L C C+ + LV WLD+C A + L +H F
Sbjct: 652 QLLALLCYCYLHEELLVMDYRWLDLCKA*SHLLPQHKTLF 533
>AV418280
Length = 398
Score = 25.4 bits (54), Expect = 2.7
Identities = 13/42 (30%), Positives = 18/42 (41%)
Frame = -2
Query: 65 EIAQHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFA 106
E + HLF +C W + WL I A P + QF+
Sbjct: 364 ECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFS 239
>NP863984 CEN/TFL1-like GTP-associated binding protein [Lotus corniculatus
var. japonicus]
Length = 525
Score = 25.4 bits (54), Expect = 2.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 20 KQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSH 52
K P+ ++ W LI ++L K + G +SH
Sbjct: 369 KHKPMDPNVRLWNLIAHQLFSKCGICCSGNISH 271
>TC20217
Length = 561
Score = 25.4 bits (54), Expect = 2.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 60 GCGGLEIAQHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFAY 107
GCG I L SCP W W+ +C+ P ++H + F +
Sbjct: 283 GCG---IL*ALLFSCPVSLDIWRHCYRWMGVCTTLPRNPRQHLL*FQF 417
>TC11673 similar to UP|Q93XA7 (Q93XA7) NAC domain protein NAC1, partial
(22%)
Length = 494
Score = 25.4 bits (54), Expect = 2.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = +1
Query: 61 CGGLEIAQHLFLSCPCFNSQWDLVRSWLDICS 92
C L +L + CP +WDL ++++CS
Sbjct: 370 C*LLSTKMYLSMICPNILGEWDL*LEFINVCS 465
>BP058043
Length = 375
Score = 25.0 bits (53), Expect = 3.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 81 WDLVRSWLDICSADPYYLQKHDIQFAYLSGSLQARR 116
W +V +WL CS P + ++F++LS ++ RR
Sbjct: 245 WVMVLNWLGKCSVSP----EVRMRFSFLSMEVRLRR 340
>AV776347
Length = 359
Score = 25.0 bits (53), Expect = 3.5
Identities = 11/38 (28%), Positives = 22/38 (56%), Gaps = 4/38 (10%)
Frame = -3
Query: 55 QLCVTGCGGLEIAQHLFLSCPCFNSQW----DLVRSWL 88
++C+ G +++ LF+SC C ++W + + SWL
Sbjct: 258 RICMICDLGEPLSRPLFISCSCLVTRWRGNPNSIYSWL 145
>TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-like, partial
(23%)
Length = 1593
Score = 24.6 bits (52), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 73 SCPCFNSQWDLVRSWLDICSA 93
+CP FN Q+ L+ WL C A
Sbjct: 991 NCPSFNCQFVLLVLWLTSCWA 929
>TC15254
Length = 581
Score = 24.6 bits (52), Expect = 4.6
Identities = 20/53 (37%), Positives = 24/53 (44%)
Frame = +3
Query: 56 LCVTGCGGLEIAQHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFAYL 108
L T G +AQH LS F S L+ WLD+ +YL K DI L
Sbjct: 309 LMTTSGRGACLAQHETLS---FESVLKLI-IWLDVYCFVKFYLLKKDIYVVLL 455
>TC11338 similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif lipase/hydrolase-like
protein, partial (6%)
Length = 600
Score = 24.6 bits (52), Expect = 4.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -3
Query: 26 VSILAWRLIRNRLLMKDNLMVRGTLSHDNQ-----LCVTGC 61
+ I+AW IRN L M+ ++SH N L V GC
Sbjct: 157 IPIIAWPFIRNTLSMQ-RCSAASSISHRNT*DK*ILSVNGC 38
>TC18127
Length = 912
Score = 24.3 bits (51), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 61 CGGLEIAQHLFLSCPCF 77
CG EI+ HL LSC F
Sbjct: 399 CGEYEISFHLLLSCLAF 449
>TC11570 similar to UP|O22165 (O22165) 60S ribosomal protein L30
(At2g44860/T13E15.13), partial (64%)
Length = 1282
Score = 24.3 bits (51), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 74 CPCFNSQWDLVRSWLDICSADP 95
CPCF S ++ S+LD ADP
Sbjct: 1143 CPCFTS*CMVMSSFLDPGIADP 1208
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.139 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,690
Number of Sequences: 28460
Number of extensions: 45474
Number of successful extensions: 294
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of query: 120
length of database: 4,897,600
effective HSP length: 79
effective length of query: 41
effective length of database: 2,649,260
effective search space: 108619660
effective search space used: 108619660
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)
Medicago: description of AC144929.2