BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144893.1 + phase: 0 /pseudo
(311 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071119 62 1e-10
AV780545 42 1e-04
BP067482 34 0.028
BF177637 32 0.14
BP048384 29 1.2
BP061087 27 3.4
AV775132 27 3.4
TC12628 27 3.4
BP070193 27 5.8
BP058211 27 5.8
BP085024 26 7.5
BP068471 26 9.9
AV770588 26 9.9
TC20220 26 9.9
TC11937 weakly similar to UP|AAS49102 (AAS49102) At1g72640, part... 26 9.9
>BP071119
Length = 412
Score = 62.0 bits (149), Expect = 1e-10
Identities = 27/58 (46%), Positives = 38/58 (64%)
Frame = +2
Query: 12 ARWWENRLHGTDLGWLQDTSYIMIDHGLIYAFVEMWHEETSSFHLPFEEITVTLDDVT 69
AR+ +H L W+ + +D +I AFVE WH ETSSFHLP+ E+T+TL+DV+
Sbjct: 236 ARYIRGAVHNAGLRWVMKCTSPSVDQSIISAFVERWHPETSSFHLPWGEMTITLEDVS 409
>AV780545
Length = 555
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 25 GWLQDTSYIMIDHGLIYAFVEMWHEETSSFHLPFEEITVTL 65
G+L+ I +D+ LI A VE W ET++FHL E+TVTL
Sbjct: 433 GYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTL 555
>BP067482
Length = 291
Score = 34.3 bits (77), Expect = 0.028
Identities = 27/101 (26%), Positives = 45/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 82 SHGFISRDEAVELMEEYLESDTGDAL-IEVDKTKGAHCRFSYLEKIFKECLKEQRDLAAE 140
S G +R+EA + + L+ D E D +G RFS+L+ I + ++ ++ A
Sbjct: 29 SFGNPTREEAAPAVAQLLDVDIETI**EEFDACRGPSLRFSFLQAIVETHVEANNEVPA- 205
Query: 141 YGVTEEVERLQDQTVRIYLLYLVGITIFTDKSQWAVDVVYL 181
R Y+L +G+T+ DKS + VYL
Sbjct: 206 --------------CRAYMLRWIGMTLVCDKSNTYIGAVYL 286
>BF177637
Length = 480
Score = 32.0 bits (71), Expect = 0.14
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 222 LTLFVYGLYIYTWLSLVQAWVFHHFPGMGSNEVWENYVENQYPRAM--LFLPLSGLGTVD 279
L+L V+ L ++ SLV V HH P + S+ +W++ + + +++P VD
Sbjct: 255 LSLHVFSLLLWVLFSLVSLRVIHHLPKLLSSLIWDSQFLSSLCLVLCPMWVPCLEQ*LVD 434
Query: 280 HYINYLDALDL 290
+N DA L
Sbjct: 435 RLLNI*DAKGL 467
>BP048384
Length = 465
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = -3
Query: 23 DLGWLQDTSYIMIDHGLIYAFVEMWHEETSSFHLPF 58
DLGW T ++ G I+ V HE SS +L F
Sbjct: 373 DLGWFVPTGEVLSPRGCIFI*VSCCHESYSS*YLQF 266
>BP061087
Length = 265
Score = 27.3 bits (59), Expect = 3.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 218 MAGYLTLFVYGLYIYTWLSLVQAWV 242
++G++ +F+YG + + WL+ WV
Sbjct: 121 VSGFIFIFLYGFHSHVWLNPFLLWV 47
>AV775132
Length = 465
Score = 27.3 bits (59), Expect = 3.4
Identities = 7/25 (28%), Positives = 18/25 (72%)
Frame = +2
Query: 239 QAWVFHHFPGMGSNEVWENYVENQY 263
+ W+ H+ G G+ +V+ N+V++++
Sbjct: 14 EVWMVQHYGGGGNEQVFNNFVDHKF 88
>TC12628
Length = 309
Score = 27.3 bits (59), Expect = 3.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 218 MAGYLTLFVYGLYIYTWLSLVQAWV 242
++G++ +F+YG + + WL + WV
Sbjct: 124 VSGFIFIFLYGFHSHAWLKPLLFWV 50
>BP070193
Length = 476
Score = 26.6 bits (57), Expect = 5.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 2 HDHDTRLIIAARWWENRLHGTD 23
HDH RWW R HG D
Sbjct: 221 HDHGCVAARPRRWWWRRAHGRD 156
>BP058211
Length = 562
Score = 26.6 bits (57), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 207 LNNAARWNCSQMAGYLTLFVYGLYIYTWLSLVQAWV 242
LN + +C+ M Y + L I+TW L ++W+
Sbjct: 256 LNTNSLISCTTMQEYPAELLEALLIWTWHLLTESWI 363
>BP085024
Length = 483
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 223 TLFVYGLYIYTWLSLVQAWV--FHH 245
TLFVY +I TWL + WV F H
Sbjct: 456 TLFVYLWFIRTWLFYLFVWVSYFRH 382
>BP068471
Length = 441
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 213 WNCSQMAGYLTLFVYGLYIYTWLSLVQAWVF 243
W C + YL L++ L ++ WL ++ AW++
Sbjct: 299 W*CLWLLIYL*LWLQILELWCWLLIIWAWLW 391
>AV770588
Length = 458
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = -3
Query: 229 LYIYTWLSLVQAWVFHHFPGMG 250
+YI W +Q+WV H PG G
Sbjct: 447 IYICNWPRELQSWVDAHGPGTG 382
>TC20220
Length = 514
Score = 25.8 bits (55), Expect = 9.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 233 TWLSLVQAWVFHHFP 247
TW LVQ W +H +P
Sbjct: 235 TWCLLVQLWCYHSYP 279
>TC11937 weakly similar to UP|AAS49102 (AAS49102) At1g72640, partial (60%)
Length = 774
Score = 25.8 bits (55), Expect = 9.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 1 MHDHDTRLIIAARWWENRLH 20
+HDH R I WWE R +
Sbjct: 362 LHDH*NRCITRYTWWEARFY 421
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,958,247
Number of Sequences: 28460
Number of extensions: 86843
Number of successful extensions: 557
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of query: 311
length of database: 4,897,600
effective HSP length: 90
effective length of query: 221
effective length of database: 2,336,200
effective search space: 516300200
effective search space used: 516300200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144893.1