BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.10 + phase: 0
(407 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12283 similar to UP|AAR23700 (AAR23700) At1g65040, partial (21%) 226 4e-60
TC12104 59 1e-09
TC11185 similar to UP|Q9SXW6 (Q9SXW6) Ring finger protein (Fragm... 54 5e-08
BE122610 53 1e-07
TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-fi... 50 5e-07
TC17068 similar to UP|Q8L775 (Q8L775) RING finger-like protein, ... 50 5e-07
TC15152 similar to UP|Q8RZY3 (Q8RZY3) RING zinc finger protein-l... 50 5e-07
TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 50 7e-07
AV413409 49 2e-06
TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Ara... 49 2e-06
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 49 2e-06
AW164008 48 3e-06
AU252073 47 8e-06
TC15641 46 1e-05
AV411204 46 1e-05
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 46 1e-05
BP038674 46 1e-05
BP037094 45 2e-05
TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] ... 45 2e-05
TC8730 similar to PIR|H96764|H96764 protein RING zinc finger pro... 45 2e-05
>TC12283 similar to UP|AAR23700 (AAR23700) At1g65040, partial (21%)
Length = 390
Score = 226 bits (577), Expect = 4e-60
Identities = 107/127 (84%), Positives = 113/127 (88%), Gaps = 1/127 (0%)
Frame = +2
Query: 248 ELYETFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLIC 307
ELYETFRNFKVRI+DY+RYRKITSNMNDRFPDATPEELN+ D TCIICREEMTTAKKLIC
Sbjct: 5 ELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEMTTAKKLIC 184
Query: 308 GHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQRPQSDANRQGEGT-GSSAQT 366
GHLFHVHCLRSWLERQHTCPTCRALVVP ENG T GGQQ QSD +RQG GT GS+AQ
Sbjct: 185 GHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGTAGSTAQN 364
Query: 367 EVGDGVA 373
E G G+A
Sbjct: 365 EAGSGMA 385
>TC12104
Length = 771
Score = 59.3 bits (142), Expect = 1e-09
Identities = 25/58 (43%), Positives = 36/58 (61%)
Frame = +1
Query: 280 ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
AT E++N+ C IC+E+M + L C H+F C+ W ER+ TCP CRA V P++
Sbjct: 385 ATMEQVNAAGNLCAICQEKMHSPILLCCKHMFCEECVSEWFERERTCPLCRASVKPAD 558
>TC11185 similar to UP|Q9SXW6 (Q9SXW6) Ring finger protein (Fragment),
partial (79%)
Length = 807
Score = 53.9 bits (128), Expect = 5e-08
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 279 DATPEELNSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCR 330
+ T EEL D+ C IC++E+ +K L C H +H C+ WL ++TCP CR
Sbjct: 308 ELTEEELRGKDMACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCR 472
>BE122610
Length = 386
Score = 52.8 bits (125), Expect = 1e-07
Identities = 33/85 (38%), Positives = 43/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 302 AKKLICGHLFHVHCLRSWLERQ----HTCPTCRALVVPSENGPTATGGQQRPQSDANRQG 357
AKKL C HLFH+ CLRSWL++ +TCPTCR P G RP+++ N
Sbjct: 19 AKKLNCNHLFHLACLRSWLDQGLTEIYTCPTCRK--------PLFAG---RPENETNSSA 165
Query: 358 EGTGSSAQ--TEVGDGVARDNLSRH 380
S Q ++ G R N +RH
Sbjct: 166 GVISSDEQLARQMSAGFDRPNPARH 240
>TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-finger,
complete
Length = 2092
Score = 50.4 bits (119), Expect = 5e-07
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +2
Query: 284 ELNSNDLTCIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
E ++ +C+IC EE + CGH +HV+C++ WL + CP C+A V+P +
Sbjct: 1760 EQGQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASVMPED 1933
>TC17068 similar to UP|Q8L775 (Q8L775) RING finger-like protein, partial
(9%)
Length = 549
Score = 50.4 bits (119), Expect = 5e-07
Identities = 22/54 (40%), Positives = 32/54 (58%), Gaps = 3/54 (5%)
Frame = +2
Query: 286 NSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPS 336
N +D+ C IC+EE A + L C H +HV C++ WL ++ CP C+A V S
Sbjct: 116 NKDDIKCSICQEEYVAADEVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPVASS 277
>TC15152 similar to UP|Q8RZY3 (Q8RZY3) RING zinc finger protein-like,
partial (11%)
Length = 779
Score = 50.4 bits (119), Expect = 5e-07
Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 3/54 (5%)
Frame = +3
Query: 283 EELNSNDLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCRALV 333
++ + D C IC+EE + +L CGH +H C++ W+E+++ CP C+ LV
Sbjct: 309 DDASQVDKNCTICQEEYEVEEEIGRLNCGHSYHYQCIQQWVEQKNFCPVCKRLV 470
>TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (20%)
Length = 921
Score = 50.1 bits (118), Expect = 7e-07
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Frame = +3
Query: 261 SDYLRYRKITSNMNDRFPDATPEELNSN---------DLTCIICREEMTTAKKL----IC 307
S + + ++++ +N D P L S+ L C +C E + L IC
Sbjct: 504 SGHRQLNELSNGLNQEVIDTFPTFLYSHVKCLKIGKGTLACAVCLNEFEDDETLRLIPIC 683
Query: 308 GHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTAT 343
H++H C+ WL TCP CRA ++P TAT
Sbjct: 684 NHVYHHSCIDLWLASHSTCPVCRASLLPITPDDTAT 791
>AV413409
Length = 374
Score = 48.5 bits (114), Expect = 2e-06
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Frame = +1
Query: 284 ELNSNDLTCIICREEM--TTAKKLI--CGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
++ L C +C E T +LI C H+FH C+ WL TCP CRA + P
Sbjct: 25 KIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHSTCPVCRANLTPQPGD 204
Query: 340 -----PTATGGQQ---RPQSDA-NRQGEGTGSSAQTEVGDGVARDNLSRHQAR 383
P G+ Q+DA Q + T + A E LSR++ +
Sbjct: 205 SVRGVPVLAAGEPEDVEAQNDAVPDQQQQTAADATAEPDVNCLNQTLSRNRTK 363
>TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;}, partial (79%)
Length = 1297
Score = 48.5 bits (114), Expect = 2e-06
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3
Query: 284 ELNSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCR 330
+++ ++LTC +C E++ + L C H FH +C+ WL +Q TCP C+
Sbjct: 858 KVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCK 1007
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 48.5 bits (114), Expect = 2e-06
Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 7/97 (7%)
Frame = +1
Query: 278 PDATPEELNSNDLTCIICREEMTTAK--KLI--CGHLFHVHCLRSWLERQHTCPTCRALV 333
P+ PE C +C E + + +++ C H FH C+ W TCP CR LV
Sbjct: 406 PEGPPE--------CAVCLSEFESGETGRVLPKCKHAFHTDCIDMWFHSHSTCPLCRTLV 561
Query: 334 VPSENGPTATGGQQRPQ---SDANRQGEGTGSSAQTE 367
P T Q RP+ D G +GS +T+
Sbjct: 562 EPEPENQT----QTRPELVLVDVPEHGSSSGSGLETD 660
>AW164008
Length = 351
Score = 47.8 bits (112), Expect = 3e-06
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +3
Query: 287 SNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
S+ + C IC++ M +AK+L CGH +H C+ WL +++CP CR
Sbjct: 183 SDTVACAICKDLMGVGQSAKRLPCGHQYHGDCIVPWLSSRNSCPVCR 323
>AU252073
Length = 258
Score = 46.6 bits (109), Expect = 8e-06
Identities = 21/48 (43%), Positives = 26/48 (53%), Gaps = 6/48 (12%)
Frame = +1
Query: 289 DLTCIIC------REEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
D C+IC RE + K CGH FH+ C+ WL +Q TCP CR
Sbjct: 25 DTQCVICLADYKEREVLRIMPK--CGHTFHLSCIDIWLRKQSTCPVCR 162
>TC15641
Length = 525
Score = 46.2 bits (108), Expect = 1e-05
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 260 ISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAK---KLICGHLFHVHCL 316
+S L I M R + E +S+ C IC+E+ + L CGH FH C+
Sbjct: 107 VSTGLSEDNIHKLMKQRLYISFMAESSSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCI 286
Query: 317 RSWLERQHTCPTCR 330
+ WL +++ CP C+
Sbjct: 287 KQWLVQKNLCPICK 328
>AV411204
Length = 427
Score = 45.8 bits (107), Expect = 1e-05
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 283 EELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
E +L C IC++ + T +L C HL+H C+ WL +++CP CR
Sbjct: 197 EHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHPSCILPWLSARNSCPLCR 349
>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (27%)
Length = 793
Score = 45.8 bits (107), Expect = 1e-05
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = +2
Query: 290 LTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPT 341
L C +C E + L C H+FH C+ +WL Q TCP CRA ++ + T
Sbjct: 20 LECAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANLLQGDAATT 187
>BP038674
Length = 545
Score = 45.8 bits (107), Expect = 1e-05
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 292 CIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
C +C E +TT K +C H FH C+ +WL + CP CR+ S +G
Sbjct: 494 CAVCLENLTTGDKCRLLPVCKHSFHAQCVDTWLLKTPICPICRSSAGSSHSG 339
>BP037094
Length = 502
Score = 45.4 bits (106), Expect = 2e-05
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -3
Query: 286 NSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRAL 332
NS+ +C+IC E +++ C H FHV C+ WL +CPTCR L
Sbjct: 455 NSSGSSCVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRNL 303
>TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(58%)
Length = 591
Score = 45.1 bits (105), Expect = 2e-05
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 292 CIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVV 334
C IC E ++ CGH FHV C+ +WL+ +CP+CR ++V
Sbjct: 328 CAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCRQILV 468
>TC8730 similar to PIR|H96764|H96764 protein RING zinc finger protein
F25P22.18 [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (23%)
Length = 583
Score = 45.1 bits (105), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Frame = +3
Query: 289 DLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334
D C IC+EE + KL C H FH C++ WL ++ CP C+ VV
Sbjct: 198 DRKCTICQEEYESDDELGKLKCEHCFHFQCIKQWLVLKNFCPVCKQEVV 344
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,220,449
Number of Sequences: 28460
Number of extensions: 106074
Number of successful extensions: 956
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of query: 407
length of database: 4,897,600
effective HSP length: 92
effective length of query: 315
effective length of database: 2,279,280
effective search space: 717973200
effective search space used: 717973200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144806.10