BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.1 + phase: 0
(260 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8998 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like arabinogalac... 28 1.2
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par... 28 1.2
TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, par... 28 2.1
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 28 2.1
TC19468 similar to UP|Q7VB79 (Q7VB79) Predicted protein family P... 27 2.7
TC17143 similar to GB|AAM26704.1|20857172|AY102137 AT3g11830/F26... 27 2.7
BP033927 27 3.5
TC12151 similar to GB|AAO64868.1|29028978|BT005933 At5g50860 {Ar... 26 6.0
BP070484 26 6.0
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 26 7.9
>TC8998 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (10%)
Length = 919
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +2
Query: 111 GTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGR 170
G A VP + P + K D VV+ ++DVA+TP AP++ +
Sbjct: 452 GAKAPVPAKGAKAPVAAQGAKAPA---PSADKVVAT--SPSSDVAETPVDAPTASSPLAS 616
Query: 171 SVRNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSL 206
+ + +D + A ST + V LVG ++ S+
Sbjct: 617 GPASGPDAADAAAPSSASSTTK-VGLVGAVMAFASV 721
>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
Length = 502
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/88 (28%), Positives = 38/88 (42%)
Frame = -3
Query: 56 TPAVQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAV 115
T A + R R++++R+ + S STR RG R G+ GE E+E L D G
Sbjct: 299 TEAKRRRRR*RSSSRRRG---SRSRSRSTRRRRGRRVGLEVGERERERLRRGGDDGEERR 129
Query: 116 VPTSRRRVPAVSTRRKKEVIVIEDEDDV 143
RRV R ++ + +V
Sbjct: 128 RR*EHRRVGNCDGARHDVIVCLSQNSNV 45
>TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, partial (40%)
Length = 784
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 88 RGGRGGVAEGEVEQENLDANVDAGTP 113
RGG G AEG E E +D V G+P
Sbjct: 278 RGGSGDAAEGVGEAEGVDLLVGVGSP 201
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 157 TPAAAPSSRTRAGRSVRNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTK 216
TPA +PSS + + S + ++ D +S A + RR+ V KS S S + + S+
Sbjct: 360 TPAFSPSSLSLSSPSSSSGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSS 181
Query: 217 N 217
+
Sbjct: 180 S 178
>TC19468 similar to UP|Q7VB79 (Q7VB79) Predicted protein family PM-3,
partial (9%)
Length = 530
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 128 TRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGR-----SVRNKTEISDGT 182
TRR+ VI + S ++ A DVA +PAA + AGR S+R + +
Sbjct: 184 TRRRP---VIAADKKTASNLELLANDVAVSPAAVDAKTPSAGRDLSHHSIRGEAYLEPAA 354
Query: 183 SVQKAYSTRRSVRLVGKSLSK 203
K ST VR KS +K
Sbjct: 355 ---KTVSTAVPVRRARKSPTK 408
>TC17143 similar to GB|AAM26704.1|20857172|AY102137 AT3g11830/F26K24_12
{Arabidopsis thaliana;}, partial (11%)
Length = 685
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 240 MLISLCLTIVNYFCSFAFV 258
+L LC ++NYFC F F+
Sbjct: 479 ILHHLCSAVINYFCYFVFI 535
>BP033927
Length = 493
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 63 TARRTTTQRKPVKEAESTKVSTR--VNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSR 120
T RR T V+E+ V TR RG RGG+ + ++ A++DA P S
Sbjct: 251 TPRRRKTS---VEESGEGGVVTRRTATRGSRGGIVDTPKKRNGKGASIDA---QFAPVSP 412
Query: 121 RRVPAVSTRRKKE 133
+ + +RK+E
Sbjct: 413 DQSESKKRKRKRE 451
>TC12151 similar to GB|AAO64868.1|29028978|BT005933 At5g50860 {Arabidopsis
thaliana;}, partial (17%)
Length = 708
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (52%)
Frame = +3
Query: 111 GTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDD 142
GTPAV RRR PA + K V V + + D
Sbjct: 249 GTPAVAGDRRRRSPAAAEGGKNAVSVPDRQKD 344
>BP070484
Length = 387
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 222 EEMSVSQNEGGSIETENGMLISLCLTIVNYFCSF 255
+++S + E S E N M+ + C T +N+FC F
Sbjct: 288 DQISDRKREIKS*EKTNNMIEN*CATHLNFFCKF 187
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 208 DTEDMESTKNDDVSEEMSVSQNEGGSIETENGM 240
+ ED E ++DD +E +++GG E E G+
Sbjct: 422 EDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGV 324
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,824,746
Number of Sequences: 28460
Number of extensions: 25154
Number of successful extensions: 175
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 260
length of database: 4,897,600
effective HSP length: 88
effective length of query: 172
effective length of database: 2,393,120
effective search space: 411616640
effective search space used: 411616640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC144806.1